Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022) (doi:10.23708/QB8BOO)

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Part 2: Study Description
Part 3: Data Files Description
Part 4: Variable Description
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Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022)

doi:10.23708/QB8BOO

DataSuds

2025-03-11

1

Guigma, Abdoul Kader; Saengram, Phonsiri; Bangratz, Martine; Kassankogno, Itolou Abalo; Tollenaere, Charlotte; Billard, Estelle, 2025, "Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022)", https://doi.org/10.23708/QB8BOO, DataSuds, V1, UNF:6:8ljQXziWNW5W0EiHZ9s4Cg== [fileUNF]

Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022)

doi:10.23708/QB8BOO

Guigma, Abdoul Kader (INERA - Burkina Faso)

Saengram, Phonsiri (UMR PHIM - Univ. Montpellier, IRD, CIRAD, INRAE, Institut Agro - France)

Bangratz, Martine (UMR PHIM - Univ. Montpellier, IRD, CIRAD, INRAE, Institut Agro - France)

Kassankogno, Itolou Abalo (INERA - Burkina Faso)

Tollenaere, Charlotte (UMR PHIM - Univ. Montpellier, IRD, CIRAD, INRAE, Institut Agro - France)

Billard, Estelle (UMR PHIM - Univ. Montpellier, IRD, CIRAD, INRAE, Institut Agro - France)

ANR-20-CE35-0004

DataSuds

Tollenaere, Charlotte

Tollenaere, Charlotte

2024-05-21

https://doi.org/10.23708/QB8BOO

Agricultural Sciences, Medicine, Health and Life Sciences, Phytopathology, Pathogen molecular detection, Co-infections

Plant sciences

<p>Co-occurrence of multiple diseases and co-infection of individual plants by various pathogens have potential epidemiological and evolutionary implications. However detailed epidemiolocal assessment involving multiple diseases remain rare, especially considering pathogens from different kingdoms.</p> <p>We aimed to document co-occurrences and co-infections for a viral and a bacterial disease of rice in Burkina Faso. Indeed, previous investigations documented the co-circulation of the rice yellow mottle disease (caused by the rice yellow mottle virus, RYMV) and bacterial leaf streak (BLS, due to Xanthomonas oryzae pv. oryzicola, Xoc) in Burkina Faso, and also experimental evidence of interactions between the pathogens causing these two diseases.</p> <p>The current study was performed to monitor these two pathogens in two sites from western Burkina faso, and two consecutive years, by combining symptom observations with specific molecular detection.</p>

2021-09-21-2022-11-21

Burkina Faso, Burkina Faso

Hauts-Bassins, BANZON, Hauts-Bassins, BADALA

• West Bounding Longitude: -4.830551147460938
• East Bounding Longitude: -4.383201599121095
• South Bounding Latitude: 11.291843464785595
• North Bounding Latitude: 11.423507422065116

</p>Project <a href="https://anr.fr/Project-ANR-20-CE35-0004">"EVolution of CO-infecting PAthogens in Rice – EVCOPAR"</a></p> <p>Data Type: Survey data</p> <p>The project obtained an official permission to sample rice leaves for research purposes (APA/Nagoya procedures).</p>

Billard E, Bangratz M, Kassankogno AI, Saengram P, Guigma AK, Cotto O, Thébaud G, Wonni I, Sérémé D, Poulicard N, Cunnac S, Hutin M, Hébrard E, Tollenaere C. Symptom observation underestimates co-infections: insight from viral and bacterial diseases in rice fields in Burkina Faso. [submitted]

Billard E, Bangratz M, Kassankogno AI, Saengram P, Guigma AK, Cotto O, Thébaud G, Wonni I, Sérémé D, Poulicard N, Cunnac S, Hutin M, Hébrard E, Tollenaere C. Symptom observation underestimates co-infections: insight from viral and bacterial diseases in rice fields in Burkina Faso. [submitted]

• Number of cases: 26

• No. of variables per record: 10

• Type of File: text/tab-separated-values

UNF:6:OTC2TskyC2R/wV7kFG+Sng==

• Number of cases: 9

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:L84yCWlkRv7HHl0bdwFInQ==

• Number of cases: 720

• No. of variables per record: 9

• Type of File: text/tab-separated-values

UNF:6:75yR8ostkW8JH4T5fFN93A==

• Number of cases: 8

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:HUOjDVDbE51q1hCiPx/pVw==

• Number of cases: 1666

• No. of variables per record: 11

• Type of File: text/tab-separated-values

UNF:6:LZSaeoeEqahgk8uFlzsQMw==

• Number of cases: 10

• No. of variables per record: 2

• Type of File: text/tab-separated-values

UNF:6:2xSCXhCrXhRhzAApfDZoYg==

• Field_ID - Field_ID
• Site - Site
• LATITUDE - LATITUDE
• LONGITUDE - LONGITUDE
• Obs_Sympt_2021 - Obs_Sympt_2021
• Obs_Sympt_2022 - Obs_Sympt_2022
• Obs_Sympt_Years - Obs_Sympt_Years
• MolDiag_2021 - MolDiag_2021
• MolDiag_2022 - MolDiag_2022
• MolDiag_Years - MolDiag_Years
• Field_ID - Field_ID
• Unique identifier of the studied rice field - Unique identifier of the studied rice field
• Field_ID - Field_ID
• Site - Site
• Year - Year
• QUADRAT - QUADRAT
• SYMPTOM - SYMPTOM
• INCIDENCE_RYMV - INCIDENCE_RYMV
• SEVERITE_RYMV - SEVERITE_RYMV
• INCIDENCE_BLS - INCIDENCE_BLS
• SEVERITE_BLS - SEVERITE_BLS
• Field_ID - Field_ID
• Unique identifier of the studied rice field - Unique identifier of the studied rice field
• Sample_ID - Sample_ID
• Year - Year
• Site - Site
• Field_ID - Field_ID
• PLANT - PLANT
• SYMPTOM - SYMPTOM
• SYMPTOM_RYMV - SYMPTOM_RYMV
• SYMPTOM_BLS - SYMPTOM_BLS
• MolDetect - MolDetect
• MolDetect_RYMV - MolDetect_RYMV
• MolDetect_Xo - MolDetect_Xo
• Sample_ID - Sample_ID
• Unique identifier of the considered sample - Unique identifier of the considered sample

f45998 Location:

Variable Format: character

Notes: UNF:6:89BTcpZOl+zxSTz+8yD1zg==

f45998 Location:

Variable Format: character

Notes: UNF:6:p5FP+SbAu6QkcgafaBlBSA==

f45998 Location:

Summary Statistics: Min. 11.3211746; Valid 26.0; StDev 0.02793581770973979; Max. 11.3873253; Mean 11.35421393076923

Variable Format: numeric

Notes: UNF:6:WTdXOBhEZdBw1bJxrt2pVQ==

f45998 Location:

Summary Statistics: Valid 26.0; Min. -4.808645; Max. -4.3613323; StDev 0.22278235804393756; Mean -4.584792158115385;

Variable Format: numeric

Notes: UNF:6:Y7cSgwZ+RRrjAwuFmLw6AA==

f45998 Location:

Summary Statistics: Mean 0.7692307692307693; Min. 0.0; Max. 1.0; Valid 26.0; StDev 0.4296689244236597

Variable Format: numeric

Notes: UNF:6:7lVGqUfgrZOmuDIArEdDxA==

f45998 Location:

Summary Statistics: Mean 0.9615384615384616; StDev 0.19611613513818396; Min. 0.0; Valid 26.0; Max. 1.0;

Variable Format: numeric

Notes: UNF:6:fTSIUTBxBJg6GkS2LNOLNA==

f45998 Location:

Variable Format: character

Notes: UNF:6:Ms0vRsP6J6QlsPwpmyPLlA==

f45998 Location:

Summary Statistics: Max. 1.0; StDev 0.4296689244236597; Min. 0.0; Valid 26.0; Mean 0.7692307692307693

Variable Format: numeric

Notes: UNF:6:7lVGqUfgrZOmuDIArEdDxA==

f45998 Location:

Summary Statistics: Valid 26.0; Mean 0.7692307692307693; Min. 0.0; Max. 1.0; StDev 0.4296689244236597;

Variable Format: numeric

Notes: UNF:6:fmkTsn23QU7Ek8E+xvcywg==

f45998 Location:

Variable Format: character

Notes: UNF:6:mYtyd+CR8zHKF2itBKKeew==

f45999 Location:

Variable Format: character

Notes: UNF:6:2vicTIUkUbNDAzN6zzx9sA==

f45999 Location:

Variable Format: character

Notes: UNF:6:f3sbs8OJE6ezXb7/NvwrGg==

f46011 Location:

Variable Format: character

Notes: UNF:6:924hZR2vbjtKe8LB1KjY/w==

f46011 Location:

Variable Format: character

Notes: UNF:6:wx3n6eXb4s9SCANuYcNEJA==

f46011 Location:

Summary Statistics: Mean 2021.5555555555557; Max. 2022.0; Valid 720.0; StDev 0.4972494270854662; Min. 2021.0

Variable Format: numeric

Notes: UNF:6:t7kw111vQiS22qjQKuq6MQ==

f46011 Location:

Variable Format: character

Notes: UNF:6:dPagyp07FdSkYi2Dow/Jig==

f46011 Location:

Variable Format: character

Notes: UNF:6:sss7Xr6a0DUfl3s8iNhlSQ==

f46011 Location:

Summary Statistics: Min. 0.0; Mean 12.148514851485158; StDev 17.93343870293391; Max. 90.0; Valid 707.0;

Variable Format: numeric

Notes: UNF:6:zmqv04KjiREIQRWxIgRohw==

f46011 Location:

Variable Format: character

Notes: UNF:6:l9ZEnbQTJFqj/BF7i/Bn4Q==

f46011 Location:

Summary Statistics: Max. 100.0; Valid 719.0; Min. 0.0; StDev 27.945400365270046; Mean 15.634214186369888;

Variable Format: numeric

Notes: UNF:6:ScgQxuXVUvXAHjz7ucGwlA==

f46011 Location:

Summary Statistics: StDev 1.7897018428276819; Min. 0.0; Mean 1.1502086230876216; Valid 719.0; Max. 7.0;

Variable Format: numeric

Notes: UNF:6:TVDjKpGdzlHDktusa3/Tog==

f46000 Location:

Variable Format: character

Notes: UNF:6:arRnJ3D7y8dT/AtSmiwleQ==

f46000 Location:

Variable Format: character

Notes: UNF:6:ig1BYcA+JBEbIqdfopYjiw==

f46010 Location:

Variable Format: character

Notes: UNF:6:iNkZGUZMEhf1RKefttGpZw==

f46010 Location:

Summary Statistics: Min. 2021.0; Mean 2021.5510204081634; Valid 1666.0; StDev 0.4975394503839567; Max. 2022.0

Variable Format: numeric

Notes: UNF:6:438tbpENy3tnXv7vBibnGw==

f46010 Location:

Variable Format: character

Notes: UNF:6:cxRmAs8DVJsacLRRoIeI7Q==

f46010 Location:

Variable Format: character

Notes: UNF:6:zl7bLpnrQDJeiSauk6lauw==

f46010 Location:

Variable Format: character

Notes: UNF:6:ZqJ8xHMyRvS32FVgFS17iA==

f46010 Location:

Variable Format: character

Notes: UNF:6:EtY4JZu0VcIVkPmescysxA==

f46010 Location:

Summary Statistics: Max. 1.0; Valid 1666.0; Mean 0.5582232893157268; Min. 0.0; StDev 0.49674758451808104

Variable Format: numeric

Notes: UNF:6:uf/EVLJS/m84ebqIaSZg4g==

f46010 Location:

Summary Statistics: Valid 1666.0; Mean 0.26890756302521074; Max. 1.0; Min. 0.0; StDev 0.44352492761990775

Variable Format: numeric

Notes: UNF:6:voLxK+XudwgkBbUVTMIldg==

f46010 Location:

Variable Format: character

Notes: UNF:6:4ytdiIIXJvGyxG1qYn5jBw==

f46010 Location:

Summary Statistics: Mean 0.562424969987996; Valid 1666.0; Max. 1.0; StDev 0.4962367709123886; Min. 0.0

Variable Format: numeric

Notes: UNF:6:Aa+RKHoe/i66QS8haDapHg==

f46010 Location:

Summary Statistics: Max. 1.0; StDev 0.4725273596682563; Valid 1666.0; Mean 0.3361344537815136; Min. 0.0

Variable Format: numeric

Notes: UNF:6:VM3XzXz6YUPSvyp6qzkC1w==

f46012 Location:

Variable Format: character

Notes: UNF:6:2NCoKa/z1uuUCTOFwUZi8A==

f46012 Location:

Variable Format: character

Notes: UNF:6:g9zJ2FNObolcw/UNpI3vMw==

Label:

Data_Coinfection_RYMV_Xo_BF_Methodology_v5.pdf

application/pdf

Label:

ReadMe.txt

Text:

Dataset citation, description and terms of use

text/plain