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Part 1: Document Description
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Citation |
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Title: |
GrAnnoT source code and scripts |
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Identification Number: |
doi:10.23708/TW3KYV |
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Distributor: |
DataSuds |
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Date of Distribution: |
2025-02-26 |
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Version: |
1 |
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Bibliographic Citation: |
Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V1 |
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Citation |
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Title: |
GrAnnoT source code and scripts |
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Identification Number: |
doi:10.23708/TW3KYV |
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Authoring Entity: |
Sabot, Francois (Institut de Recherche pour le Développement) |
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Marthe, Nina (Institut de Recherche pour le Développement) |
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Zytnicki, Matthias (MIAT) |
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Software used in Production: |
GrAnnoT |
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Distributor: |
DataSuds |
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Access Authority: |
SABOT, Francois |
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Depositor: |
SABOT, Francois |
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Date of Deposit: |
2025-02-26 |
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Holdings Information: |
https://doi.org/10.23708/TW3KYV |
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Study Scope |
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Keywords: |
Agricultural Sciences, Computer and Information Science, Medicine, Health and Life Sciences |
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Topic Classification: |
Computer sciences |
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Abstract: |
Source code for GrAnnoT and all the scripts that has been used for the paper for it |
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Kind of Data: |
source code |
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Methodology and Processing |
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Sources Statement |
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Data Access |
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Other Study Description Materials |
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Label: |
LICENSE |
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Notes: |
text/plain; charset=US-ASCII |
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Label: |
pyproject.toml |
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Notes: |
application/octet-stream |
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README.md |
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Notes: |
text/markdown |
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Label: |
add_features_to_graph.py |
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Notes: |
text/x-python |
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alignment.py |
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Notes: |
text/x-python |
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argparser.py |
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Notes: |
text/x-python |
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ClassSegFeat.py |
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Notes: |
text/x-python |
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compute_cov_id.py |
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Notes: |
text/x-python |
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compute_transfer_stat.py |
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Notes: |
text/x-python |
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detect_copies.py |
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Notes: |
text/x-python |
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detect_inversion.py |
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Notes: |
text/x-python |
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find_feature_target_path.py |
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Notes: |
text/x-python |
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genome_transfer.py |
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Notes: |
text/x-python |
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getSegmentsCoordinates.py |
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Notes: |
text/x-python |
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Label: |
grannot_help.md |
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Notes: |
text/markdown |
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Label: |
graph_annot.py |
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Notes: |
text/x-python |
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Label: |
inference.py |
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Notes: |
text/x-python |
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intersect.py |
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Notes: |
text/x-python |
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load_gfa.py |
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Notes: |
text/x-python |
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main.py |
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Notes: |
text/x-python |
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poster_annotation_transfer.pdf |
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Notes: |
application/pdf |
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Label: |
setup_transfer.py |
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Notes: |
text/x-python |
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usefull_little_functions.py |
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Notes: |
text/x-python |
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variation_details.py |
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Notes: |
text/x-python |
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__init__.py |
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Notes: |
text/x-python |
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applications.py |
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Notes: |
text/x-python |
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compare_double_transfer.ipynb |
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Notes: |
application/x-ipynb+json |
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compare_genome_transfers.ipynb |
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Notes: |
application/x-ipynb+json |
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compare_genome_transfers_upset.R |
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Notes: |
type/x-r-syntax |
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compare_graph_ref.ipynb |
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Notes: |
application/x-ipynb+json |
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compare_graph_transfers.ipynb |
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Notes: |
application/x-ipynb+json |
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compare_graph_transfers_upset.R |
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Notes: |
type/x-r-syntax |
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compare_liftoff_grannot_species.ipynb |
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Notes: |
application/x-ipynb+json |
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compare_time_12transfers.R |
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Notes: |
type/x-r-syntax |
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README.md |
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Notes: |
text/markdown |
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TE_IT_liftoff_grannot.ipynb |
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Notes: |
application/x-ipynb+json |
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TE_IT_rates.R |
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Notes: |
type/x-r-syntax |
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variation_rate_per_feature_type.R |
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Notes: |
type/x-r-syntax |
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GrAnnoT-1.0.2-py3-none-any.whl |
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Notes: |
application/octet-stream |
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grannot-1.0.2.tar.gz |
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Notes: |
application/gzip |
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Label: |
GrAnnoT-1.0.3.dev0-py3-none-any.whl |
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Notes: |
application/octet-stream |
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Label: |
grannot-1.0.3.dev0.tar.gz |
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Notes: |
application/gzip |