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File Type: Archive

201 to 210 of 263 Results

Haplotype_diversity.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 21.6 KB - MD5: 0034569f5c0ec472d94cf2b5530d77a2 CodeData Input data and script used to compute haplotype diversity in each population for Table 1. To uncompress, type "tar xzvf Haplotype_diversity.tar.gz"
Phylogenetic_tree.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 2.1 MB - MD5: 9006ed11c813d0a9216ab1d3d3f231f9 Data Input data and settings used to build the phylogenetic tree. To uncompress, type "tar xzvf Phylogenetic_tree.tar.gz"
Rarefaction.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 33.5 KB - MD5: b247f1ff7cd9314f6b72acb236e2ec84 CodeData Input data and script to replicate the rarefaction analysis for the estimators of mtDNA genetic diversity. To uncompress, type "tar xzvf Rarefaction.tar.gz"
Census-1.zip Jul 25, 2023 - Replication code for: Education, civic engagement and political participation Evidence from school construction in Malian villages ZIP Archive - 7.1 KB - MD5: 8fc47f937423c255bec678cccd58b1e9 Code
EMOP-1.zip Jul 25, 2023 - Replication code for: Education, civic engagement and political participation Evidence from school construction in Malian villages ZIP Archive - 22.5 KB - MD5: 14c4a95d3129a240176c756b3e78e2a4 Code
Louis_et_al2023_3.1.1.smartpca_fromvcf.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 41.6 MB - MD5: edeb5067263a9c6545e0ebbf479817d1 CodeData Input file and scripts to format a vcf file and run smartpca (Figure S4). To uncompress, type "tar xzvf 3.1.1.smartpca_fromvcf.tar.gz"
Louis_et_al2023_3.1.2.smartpca_fromhaplo.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 29.7 MB - MD5: 7f3a8762ab2f1393f629b9061ed84167 CodeData Scripts and input files to format an haplo file and run smartpca both for the data mapped to the killer whale reference genome and bottlenose dolphin reference genome (see subfolder mapped_Ttruncatus) (Figures 1c, S5 and S6). To uncompress, type "tar xzvf 3.1.2.smartpca_fromhaplo...
Louis_et_al2023_3.2.single_read_PCA.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 16.2 KB - MD5: 38529e12e86c2043ba0147206cb23475 CodeData Scripts and input files to run and plot a single-read PCA (Figure S8). To uncompress, type "tar xzvf 3.2.single_read_PCA.tar.gz"
Louis_et_al2023_3.3.tfa.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 1.1 MB - MD5: 1d4689415c6c66efd15ac30ad8866e16 CodeData Scripts and input file to run and plot the tfa - factor analysis (Figures 1d and S7). To uncompress, type "tar xzvf 3.3.tfa.tar.gz"
Louis_et_al2023_3.4.PCA_downsampling_modern.tar.gz Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters Gzip Archive - 13.1 MB - MD5: 39d6bc3f6db277efe72dc0fb0dd72e8d CodeData Scripts and input files to run smartpca (subfolder 3.4.1.smartpca) and the single read PCA (subfolder 3.4.2.single_read) on the modern data including one individual downsampled to 0.03x (Figure S3). To uncompress, type "tar xzvf 3.4.PCA_downsampling_modern.tar.gz"

Haplotype_diversity.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 21.6 KB -

CodeData

Input data and script used to compute haplotype diversity in each population for Table 1. To uncompress, type "tar xzvf Haplotype_diversity.tar.gz"

Phylogenetic_tree.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 2.1 MB -

Data

Input data and settings used to build the phylogenetic tree. To uncompress, type "tar xzvf Phylogenetic_tree.tar.gz"

Rarefaction.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 33.5 KB -

CodeData

Input data and script to replicate the rarefaction analysis for the estimators of mtDNA genetic diversity. To uncompress, type "tar xzvf Rarefaction.tar.gz"

Census-1.zip

Jul 25, 2023 - Replication code for: Education, civic engagement and political participation Evidence from school construction in Malian villages

ZIP Archive - 7.1 KB -

Code

EMOP-1.zip

Jul 25, 2023 - Replication code for: Education, civic engagement and political participation Evidence from school construction in Malian villages

ZIP Archive - 22.5 KB -

Code

Louis_et_al2023_3.1.1.smartpca_fromvcf.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 41.6 MB -

CodeData

Input file and scripts to format a vcf file and run smartpca (Figure S4). To uncompress, type "tar xzvf 3.1.1.smartpca_fromvcf.tar.gz"

Louis_et_al2023_3.1.2.smartpca_fromhaplo.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 29.7 MB -

CodeData

Scripts and input files to format an haplo file and run smartpca both for the data mapped to the killer whale reference genome and bottlenose dolphin reference genome (see subfolder mapped_Ttruncatus) (Figures 1c, S5 and S6). To uncompress, type "tar xzvf 3.1.2.smartpca_fromhaplo...

Louis_et_al2023_3.2.single_read_PCA.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 16.2 KB -

CodeData

Scripts and input files to run and plot a single-read PCA (Figure S8). To uncompress, type "tar xzvf 3.2.single_read_PCA.tar.gz"

Louis_et_al2023_3.3.tfa.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 1.1 MB -

CodeData

Scripts and input file to run and plot the tfa - factor analysis (Figures 1d and S7). To uncompress, type "tar xzvf 3.3.tfa.tar.gz"

Louis_et_al2023_3.4.PCA_downsampling_modern.tar.gz

Jun 9, 2023 - Replication data and scripts for: Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters

Gzip Archive - 13.1 MB -

CodeData

Scripts and input files to run smartpca (subfolder 3.4.1.smartpca) and the single read PCA (subfolder 3.4.2.single_read) on the modern data including one individual downsampled to 0.03x (Figure S3). To uncompress, type "tar xzvf 3.4.PCA_downsampling_modern.tar.gz"

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