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Publication Year: 2021

241 to 250 of 304 Results

PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Plain Text - 46.4 KB - MD5: e5a17d624409c0fd6ecce49ba7f7ab0a Data Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...
PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.0 KB - MD5: e4c59802a37fb02dc0e4ac16e26bdfbb Documentation Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA002_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.9 KB - MD5: ed792730f5aa2ce95321c2c9f7cc7232 Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA002 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA006_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 37.7 KB - MD5: 43bddb45cbc6c38fd7dda65051be8afa Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA006 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA007_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.3 KB - MD5: dc55589ab73b6ba93f1eecabd4d093fc Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA007 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA009_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 39.3 KB - MD5: 6c4f17dd6e5181969cca00188faa63e5 Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA009 locus as well as the sequence of the annotated MSU locus transcript in this window.
PHIM_ xisRNA_xisRNA010_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.8 KB - MD5: 804f2621d10c84bb799ce7221ab78453 Plot Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA010 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Plain Text - 46.4 KB -

Data

Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.0 KB -

Documentation

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA002_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.9 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA002 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA006_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 37.7 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA006 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA007_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.3 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA007 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA009_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 39.3 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA009 locus as well as the sequence of the annotated MSU locus transcript in this window.

PHIM_ xisRNA_xisRNA010_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.8 KB -

Plot

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA010 locus as well as the sequence of the annotated MSU locus transcript in this window.

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