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Publication Year: 2025

241 to 250 of 299 Results

PearlMillet.all.snps_maf0.05_miss0.5.vcf Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) text/vcard - 637.7 MB - MD5: 2e19a54384d3913873558ad6f833d9ff Data Filtered SNPs from GBS genotyping (file used for pruning)
Pearl_Millet_IonoMil_Data_Dictionary.tab Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) Tabular Data - 1.2 KB - 3 Variables, 44 Observations - UNF:6:6gtf1TyKWj5epK5wWgpcUQ== Documentation Data dictionary
Pearl_millet_IonoMil_ReadMe.txt Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) Plain Text - 5.5 KB - MD5: e056720a5486b5f6dc4d394025c36b98 Documentation Dataset citation, description and terms of use
Pruning_script.txt Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) Plain Text - 792 B - MD5: 58731d81bc0bf19bf2291cdaef04f070 Code R script used to remove non-independent SNPs from the vcf
Residus_IonoMil_WW_2021.txt Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) Plain Text - 31.7 KB - MD5: 2fe1a762a84469f22831013acb1fc369 Data Residuals of the linear regression between individual ion concentrations (BLUEs) and flowering time measured under the well-watered treatment in 2021
Residus_IonoMil_WW_2022.txt Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) Plain Text - 31.8 KB - MD5: fa5e3adc5157d85417597c57f1f464dc Data Residuals of the linear regression between individual ion concentrations (BLUEs) and flowering time measured under the well-watered treatment in 2022
RUN_boxcox_transformation.r Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) R Syntax - 15.9 KB - MD5: 2197d4e493f646297ed03db3e371a516 Code R script used to transform BLUEs and residues in order to achieve normality
RUN_fisher_combining.R Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) R Syntax - 18.8 KB - MD5: 97c87ba6aa07de5baf01177be72fcb22 Code R script used to perform the Fisher combining analysis
RUN_GWAS_ionomil.R Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) R Syntax - 10.4 KB - MD5: 18a3cee3c24956d4bd8fc0ce8f97d939 Code R script used to perform the association analyses
RUN_linear_regression.r Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022) R Syntax - 3.4 KB - MD5: edde31ddcad90b96aaf8d6dda72103c8 Code R script used to calculate the residues

PearlMillet.all.snps_maf0.05_miss0.5.vcf

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

text/vcard - 637.7 MB -

Data

Filtered SNPs from GBS genotyping (file used for pruning)

Pearl_Millet_IonoMil_Data_Dictionary.tab

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

Tabular Data - 1.2 KB - 3 Variables, 44 Observations -

Documentation

Data dictionary

Pearl_millet_IonoMil_ReadMe.txt

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

Plain Text - 5.5 KB -

Documentation

Dataset citation, description and terms of use

Pruning_script.txt

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

Plain Text - 792 B -

Code

R script used to remove non-independent SNPs from the vcf

Residus_IonoMil_WW_2021.txt

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

Plain Text - 31.7 KB -

Data

Residuals of the linear regression between individual ion concentrations (BLUEs) and flowering time measured under the well-watered treatment in 2021

Residus_IonoMil_WW_2022.txt

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

Plain Text - 31.8 KB -

Data

Residuals of the linear regression between individual ion concentrations (BLUEs) and flowering time measured under the well-watered treatment in 2022

RUN_boxcox_transformation.r

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

R Syntax - 15.9 KB -

Code

R script used to transform BLUEs and residues in order to achieve normality

RUN_fisher_combining.R

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

R Syntax - 18.8 KB -

Code

R script used to perform the Fisher combining analysis

RUN_GWAS_ionomil.R

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

R Syntax - 10.4 KB -

Code

R script used to perform the association analyses

RUN_linear_regression.r

Jan 30, 2025 - Leaf ion content in pearl millet (Senegal, 2021-2022)

R Syntax - 3.4 KB -

Code

R script used to calculate the residues

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