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File Type: Text

121 to 130 of 280 Results

0_ReadMe.txt Jun 3, 2024 - Innovative and Rapid Access to Points of Care to Optimise the Care of Newborns and Infants Exposed to HIV in Conakry, Guinea (2020-2021) Plain Text - 1.7 KB - MD5: e8e206867960b372de5e6c36e1de08a3 Documentation Dataset citation, description and terms of use.
2_LULC_IvoryCoast_Bouake_2020_readme.txt May 24, 2024 - Land use land cover ultra-high-spatial-resolution digital maps (5-cm) for 4 urban districts of the city of Bouaké (Air France, Belleville, Koko, Sossoribougou), center Côte d'Ivoire, 2020 Plain Text - 3.6 KB - MD5: 92cda516b4a2d7729660deef3b843226 Documentation Dataset citation and description
0_ReadMe.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 2.1 KB - MD5: 0ad59fd46069aaec2008347fc45ec2ce Documentation Dataset citation, description and terms of use.
chr5_5association.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 382.2 MB - MD5: 5888c01657ff5624ad88b8200d103076 Data This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).
millet_filtered.vcf May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) text/vcard - 34.5 MB - MD5: 6eab73245746d73169f90b8141511fa0 Data VCF file containing the genomic data of the pearl millet. This data file is associated with the script "S3_Genetic_diversity+structure.html".These data are published in Berthouly-Salazar et al. (2016).
S1_example.txt May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) Plain Text - 3.6 KB - MD5: 3bc9d9f537ea4d956c4dc7f7970e7956 Documentation
S1_Introduction_to_R_Passeport.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 971.1 KB - MD5: 73c5daf1d31fad39ea3b274ed6a2aafc CodeDocumentation This file show a very brief introduction to R with basic command lines used to import and explore a passport data. We used the passport file associated to the GBS analysis of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an...
S2_filter_VCF.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 1.9 MB - MD5: b8eb1f1c105a3ea55d2405931411c28e CodeDocumentation This file show an introduction to VCF filtering with GBS data using R. We used the datset of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an Rmarkdown file (.Rmd). The Data dictionary is included in the file.
S3_Genetic_diversity+structure.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 4.3 MB - MD5: 828d31d700d62f10b8f9fbf120f7883a CodeDocumentation In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...
0_ReadMe.txt May 13, 2024 - Prospective evaluation of the specificity of serological tests for Human African Trypanosomiasis: documentation and data Plain Text - 3.9 KB - MD5: 0a83b63402bf225c427b12298bee2a61 Documentation Dataset citation, description and terms of use.

0_ReadMe.txt

Jun 3, 2024 - Innovative and Rapid Access to Points of Care to Optimise the Care of Newborns and Infants Exposed to HIV in Conakry, Guinea (2020-2021)

Plain Text - 1.7 KB -

Documentation

Dataset citation, description and terms of use.

2_LULC_IvoryCoast_Bouake_2020_readme.txt

May 24, 2024 - Land use land cover ultra-high-spatial-resolution digital maps (5-cm) for 4 urban districts of the city of Bouaké (Air France, Belleville, Koko, Sossoribougou), center Côte d'Ivoire, 2020

Plain Text - 3.6 KB -

Documentation

Dataset citation and description

0_ReadMe.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 2.1 KB -

Documentation

Dataset citation, description and terms of use.

chr5_5association.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 382.2 MB -

Data

This file contains the data for the GWAS analysis to be used with 'S4_script_GWAS_basic_Rcode.pdf' (Varshney et al. 2017).

millet_filtered.vcf

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

text/vcard - 34.5 MB -

Data

VCF file containing the genomic data of the pearl millet. This data file is associated with the script "S3_Genetic_diversity+structure.html".These data are published in Berthouly-Salazar et al. (2016).

S1_example.txt

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

Plain Text - 3.6 KB -

Documentation

S1_Introduction_to_R_Passeport.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 971.1 KB -

CodeDocumentation

This file show a very brief introduction to R with basic command lines used to import and explore a passport data. We used the passport file associated to the GBS analysis of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an...

S2_filter_VCF.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 1.9 MB -

CodeDocumentation

This file show an introduction to VCF filtering with GBS data using R. We used the datset of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an Rmarkdown file (.Rmd). The Data dictionary is included in the file.

S3_Genetic_diversity+structure.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 4.3 MB -

CodeDocumentation

In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...

0_ReadMe.txt

May 13, 2024 - Prospective evaluation of the specificity of serological tests for Human African Trypanosomiasis: documentation and data

Plain Text - 3.9 KB -

Documentation

Dataset citation, description and terms of use.

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