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File Tag: Code

1 to 10 of 254 Results

get_seglen_frombam.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
print_venn_gratools.R Mar 10, 2026 - Supporting data and scripts produced by the GraTools software R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
script_jap_ind.sh Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Shell Script - 1.0 KB - MD5: a52ca15e3c8d29b76e4828439be17001 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
venn_gratools.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
01_analyze_grqa_global_bias.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 19.8 KB - MD5: 5efae69ee4bc4dea8bf4211e975225c1 Code - Generate manuscript Figure 1 (global monitoring coverage map) - OUTPUT: grqa_coverage_and_bias.png, grqa_asia_subregions_stacked.png
02_qc_flags.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 15.4 KB - MD5: 7b6691de2a2138e42ab91ba31d80a9d9 Code - INPUT: SDNR_*_standardized.csv (included in ../data/) - Applies quality control rules (outlier detection, range checks) - Enforces stoichiometric constraints (TN ≥ DIN, TP ≥ PO4) - Assigns 5-tier QC flags (1=Good → 5=Rejected) - Generates flag_overall column -...
03_export_good.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 4.2 KB - MD5: 45f1c783248e9cb6f1534dc4381240bc Code - Exports flag==1 subset (optional) - Useful for users wanting only Good data
03_tables.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 9.9 KB - MD5: ea086b59b899ff44382454ff1b7ce85c Code - INPUT: SDNR__QC.csv - Generates gap audit tables - Creates data completeness summary - OUTPUT: gap_audit_.csv, data_completeness_summary.csv
04_figures_qc.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 10.2 KB - MD5: 0e4495fcb31a90e54ba2355fa854369d Code - INPUT: SDNR_*_QC.csv - Generate all manuscript figures
05_figures_timeseries.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 12.0 KB - MD5: 8d6c9d6fcc4f157728a0ae0bcc6d1a71 Code - INPUT: SDNR_*_QC.csv - Generate all manuscript figures

get_seglen_frombam.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 3.3 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

print_venn_gratools.R

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

R Syntax - 947 B -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

script_jap_ind.sh

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Shell Script - 1.0 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

venn_gratools.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 2.8 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

01_analyze_grqa_global_bias.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 19.8 KB -

Code

- Generate manuscript Figure 1 (global monitoring coverage map) - OUTPUT: grqa_coverage_and_bias.png, grqa_asia_subregions_stacked.png

02_qc_flags.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 15.4 KB -

Code

- INPUT: SDNR_*_standardized.csv (included in ../data/) - Applies quality control rules (outlier detection, range checks) - Enforces stoichiometric constraints (TN ≥ DIN, TP ≥ PO4) - Assigns 5-tier QC flags (1=Good → 5=Rejected) - Generates flag_overall column -...

03_export_good.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 4.2 KB -

Code

- Exports flag==1 subset (optional) - Useful for users wanting only Good data

03_tables.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 9.9 KB -

Code

- INPUT: SDNR_*_QC.csv - Generates gap audit tables - Creates data completeness summary - OUTPUT: gap_audit_*.csv, data_completeness_summary.csv

04_figures_qc.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam