1 to 10 of 27 Results
Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1
Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive... |
Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Code source for GraTools v1.1.0", https://doi.org/10.23708/DXOP8N, DataSuds, V1
This code is the original source code submitted for GraTools in March 2026. This is a dump of the IRD Forge git, master branch |
Oct 29, 2025 - GrAnnoT data and output
Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6
GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations. |
Oct 29, 2025 - GrAnnoT data and output
Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V6
GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations. |
Kaczmarek, Thomas; Faye, Adama; Ilmi Ahmed, Aicha; Veltman, Margaretha; Thuillet, Anne-Celine; Scarcelli, Nora; Sultan, Benjamin; Vigouroux, Yves; Cubry, Philippe, 2025, "Testing the impact of environmental variables on the predictive performance of genomic offset statistics: crop-specific metrics computed from the EWEMBI v.1 climate dataset.", https://doi.org/10.23708/M9YGDC, DataSuds, V1, UNF:6:EdX+/x3auhCXDY0Q7OgZ4g== [fileUNF]
The ability of species and populations to adapt to their environment faces increasing challenges as climate change accelerates. Recent methods based on genomic offset (GO) statistics aim to quantify the risk of non-adaptation of populations to future climates. While several studi... |
Duminil, Jerome; Dupiol, Pablo; Chakocha Ngandjui, Armel Franklin; Tientcheu, Avana Marie Louise; Mariac, Cedric; Charahabil, Mohamed Mahamoud; Barnaud, Adeline, 2025, "Development of new microsatellites markers for Cola acuminata (Malvaceae), a socio-economically important fruit tree species in Central Africa", https://doi.org/10.23708/6FCSLF, DataSuds, V1, UNF:6:JjyY2CKXXeBPZvLKRN5hnA== [fileUNF]
Data from the publication "Development of new microsatellites markers for Cola acuminata (Malvaceae), a socio-economically important fruit tree species in Central Africa". Manuscript PJS_2_147801 Plant Ecology and Evolution. We developed a new set of nuclear microsatellite marker... |
Jun 20, 2025 - DYNADIV Team
Gotty, Karine; Pillon, Yohan, 2025, "Taxonomy of the native angiosperm flora of New Caledonia in 1911, 1948, 2001, 2012 and 2024", https://doi.org/10.23708/TLRYUM, DataSuds, V1, UNF:6:uST0iWeHOy7tvpNpRUnNdw== [fileUNF]
The table lists all angiosperm species from New Caledonia cited in five successive checklists published in 1911, 1948, 2001, 2012 and 2024. The table track the fate of each species in the five checklissts and in particular the changes in genus and family. |
Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2
GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main |
Vadez, Vincent; Bossuet, Jérome; Chehbouni, Abdelghani; Kharrou, Mohamed (hakim); Jacob, Frederic; Mekki, Insaf; Zitouna Chebbi, Rim; Belhouchette, Hatem; Hassenforder, Emeline; Faysse, Nicolas; Hajjarpoor, Amir; Rebolledo, Maria Camila; Cohard, Jean-Martial; Vandervaere, Jean-Pierre; Dolinska, Aleksandra; Sultan, Benjamin, 2021, "France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions", https://doi.org/10.23708/IY0MZY, DataSuds, V4, UNF:6:r1Sk6vJDiM0/k0efcWB/bQ== [fileUNF]
Under the new oneCGIAR 2030 strategy, the CGIAR has been undertaking an integrated land-food-water systems research transformation, to deploy sustainable agricultural innovations at a faster rate for smallholder agriculture in the developing countries. France has been supporting... |
Nakombo-Gbassault, Princia; Arenas, Sebastian; Affortit, Pablo; Faye, Awa; Flis, Paulina; Sine, Bassirou; Moukouanga, Daniel; Kane, Ndjido Ardo; Bennett, Malcolm; Wells, Darren; Cubry, Philippe; Bailey, Liz; Grondin, Alexandre; Vigouroux, Yves; Laplaze, Laurent, 2025, "Leaf ion content in pearl millet (Senegal, 2021-2022)", https://doi.org/10.23708/DWGEAJ, DataSuds, V1, UNF:6:eg+VmV/nauULROuvgkx5Ig== [fileUNF]
Pearl millet (Pennisetum glaucum) is a nutrient-rich cereal crop cultivated in arid and semi-arid regions, particularly in sub-Saharan Africa, where it serves as a vital source of grain and fodder for millions of smallholder farmers. This crop is known to produce in hot, dry clim... |
