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391 to 400 of 7,597 Results

SDNR_transects_QC.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 29.6 KB - 45 Variables, 162 Observations - UNF:6:aHx3OEqwNpLIg2Hn8NRtYg== Données - Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - PRIMARY DATA FILE FOR USERS - File size: ~30 KB
SDNR_transects_standardized.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 23.8 KB - 26 Variables, 162 Observations - UNF:6:ii2FAPWT4tpdMZPifowkaA== Données - Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB
_shared.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 7.0 KB - MD5: 04013112f3454eff2ad5716365719c83 Code
station_metadata.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 354 B - 3 Variables, 4 Observations - UNF:6:rd+suLd8zavZVSIsvgXulQ== Documentation - Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics
asv1.fasta Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056 Données Fasta file required for ViroSeek_downstream_analysis.rmd
bash.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 2.4 KB - MD5: 000890f8685ca18eac744416df40240e Code Modules for ViroSeek
bbmap.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 693 B - MD5: e8fa0db631cf655672f252ca01ef8789 Code Modules for ViroSeek
bioawk.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 655 B - MD5: 76915c2d9c8fc0265abb386b301e7c73 Code Modules for ViroSeek
CAMISIM_script.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 4.3 KB - MD5: 7d1270ccb9f41129020b74093984e1ba Code Script to generate simulated paired-end metagenomic samples
compile2.py Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Python Source Code - 3.7 KB - MD5: 5b7a5150bc4f3414b6258c75ab30f952 Code Script for summarising for each taxonomic assignment

SDNR_transects_QC.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 29.6 KB - 45 Variables, 162 Observations -

Données

- Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - **PRIMARY DATA FILE FOR USERS** - File size: ~30 KB

SDNR_transects_standardized.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 23.8 KB - 26 Variables, 162 Observations -

Données

- Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB

_shared.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 7.0 KB -

Code

station_metadata.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 354 B - 3 Variables, 4 Observations -

Documentation

- Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics

asv1.fasta

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 1.8 KB -

Données

Fasta file required for ViroSeek_downstream_analysis.rmd

bash.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 2.4 KB -

Code

Modules for ViroSeek

bbmap.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 693 B -

Code

Modules for ViroSeek

bioawk.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 655 B -

Code

Modules for ViroSeek

CAMISIM_script.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 4.3 KB -

Code

Script to generate simulated paired-end metagenomic samples

compile2.py

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Python Source Code - 3.7 KB -

Code

Script for summarising for each taxonomic assignment

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