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File Type: Text

141 to 150 of 421 Results

refpath_odgi Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 663 B - MD5: 52f6a241090f7c84ec4bb2647a25c280 Text file necessary to run ODGI on the rice data.
refpath_vg Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 687 B - MD5: f46438fd1982895d067497b239b317c5 Data Text file necessary to run VG on the rice data.
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
PAV_matrix.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 2.1 MB - MD5: a67aa4c80fb648e2586beff20acc3b3f Data PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.
AzucenaRS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: b98afd5ec89d221a537add6e276b31cf Data File produced by Liftoff during annotation transfer.
AzucenaRS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: d0ea8095b034432d92d46f9a2eb9402d Data File produced by Liftoff during annotation transfer.
Os117425RS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 35.4 KB - MD5: d6872b91cdbfcf903bec188b3ed5f808 Data File produced by Liftoff during annotation transfer.
Os117425RS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 35.4 KB - MD5: 1522443fb9f6f2b75b7d11f505e9da93 Data File produced by Liftoff during annotation transfer.
Os125619RS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 47.8 KB - MD5: 28c111d648d615a3e57e2b1ff79586ad Data File produced by Liftoff during annotation transfer.
Os125619RS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 47.8 KB - MD5: 4262eeecc51090e0a9675e9825a61ed6 Data File produced by Liftoff during annotation transfer.

refpath_odgi

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 663 B -

Text file necessary to run ODGI on the rice data.

refpath_vg

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 687 B -

Data

Text file necessary to run VG on the rice data.

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

PAV_matrix.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 2.1 MB -

Data

PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.

AzucenaRS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data