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File Type: Text

171 to 180 of 456 Results

ReadMe.txt Mar 20, 2025 - GrAnnoT source code and scripts Plain Text - 516 B - MD5: 25f858eade603eac11fdeab6de8f5863 Documentation Data citation, description and terms of use
ReadMe.txt Mar 20, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 499 B - MD5: 683ef0fb3b9ffa3088f3c14f327409b3 Documentation Data citation, description and terms of use
ReadMe.txt Mar 20, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 488 B - MD5: e92eb31e2015df3e015c0b4f9fec78b2 Documentation Data citation, description and terms of use
ReadMe.txt Mar 11, 2025 - Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022) Plain Text - 1.4 KB - MD5: e8e5b8a669950ba5109bb08bd1c3adf3 Documentation Dataset citation, description and terms of use
feature_types.txt Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 638 B - MD5: 571dcfb312543edd81dca0524212459a Lists all the feature types in the human annotation (CHM13_chr1.gff), necessary to run Liftoff on all the features.
refpath_odgi Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 663 B - MD5: 52f6a241090f7c84ec4bb2647a25c280 Text file necessary to run ODGI on the rice data.
refpath_vg Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 687 B - MD5: f46438fd1982895d067497b239b317c5 Data Text file necessary to run VG on the rice data.
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
PAV_matrix.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 2.1 MB - MD5: a67aa4c80fb648e2586beff20acc3b3f Data PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.
AzucenaRS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: b98afd5ec89d221a537add6e276b31cf Data File produced by Liftoff during annotation transfer.

ReadMe.txt

Mar 20, 2025 - GrAnnoT source code and scripts

Plain Text - 516 B -

Documentation

Data citation, description and terms of use

ReadMe.txt

Mar 20, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 499 B -

Documentation

Data citation, description and terms of use

ReadMe.txt

Mar 20, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 488 B -

Documentation

Data citation, description and terms of use

ReadMe.txt

Mar 11, 2025 - Symptom evaluation, sampling, and molecular detection for two rice diseases (rice yellow mottle and Bacterial leaf streak) in western Burkina Faso (2021-2022)

Plain Text - 1.4 KB -

Documentation

Dataset citation, description and terms of use

feature_types.txt

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 638 B -

Lists all the feature types in the human annotation (CHM13_chr1.gff), necessary to run Liftoff on all the features.

refpath_odgi

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 663 B -

Text file necessary to run ODGI on the rice data.

refpath_vg

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 687 B -

Data

Text file necessary to run VG on the rice data.

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

PAV_matrix.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 2.1 MB -

Data

PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.

AzucenaRS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

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