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File Type: Text

261 to 270 of 421 Results

S1_Introduction_to_R_Passeport.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 971.1 KB - MD5: 73c5daf1d31fad39ea3b274ed6a2aafc CodeDocumentation This file show a very brief introduction to R with basic command lines used to import and explore a passport data. We used the passport file associated to the GBS analysis of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an...
S2_filter_VCF.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 1.9 MB - MD5: b8eb1f1c105a3ea55d2405931411c28e CodeDocumentation This file show an introduction to VCF filtering with GBS data using R. We used the datset of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an Rmarkdown file (.Rmd). The Data dictionary is included in the file.
S3_Genetic_diversity+structure.html May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa) HTML - 4.3 MB - MD5: 828d31d700d62f10b8f9fbf120f7883a CodeDocumentation In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...
0_ReadMe.txt May 13, 2024 - Prospective evaluation of the specificity of serological tests for Human African Trypanosomiasis: documentation and data Plain Text - 3.9 KB - MD5: 0a83b63402bf225c427b12298bee2a61 Documentation Dataset citation, description and terms of use.
0_ReadMe.txt May 13, 2024 - Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022 Plain Text - 1.5 KB - MD5: 252fed996aee97b36f7db50c9fc0fa83 Documentation Dataset citation, description and terms of use.
0_Readme.txt May 3, 2024 - Grand âge et VIH au Cameroun et au Sénégal, anthropologie du vieillissement et de la maladie (2022-2024) Plain Text - 4.6 KB - MD5: d9400e4ea941e247806e7cf34152f15e Documentation Fichier "Readme" - titre, description et conditions d'utilisations des données et documentations
0_ReadMe.txt Apr 29, 2024 - R script and replication data for: A simple and practical method to increase the infectivity of wild isolates of Plasmodium falciparum to mosquito vectors Plain Text - 2.6 KB - MD5: 830feae070ae70b1b2ac57d6c4db094c Documentation ReadMe file - data citation, description and terms of use.
feeding_rate_fig2a.txt Apr 29, 2024 - R script and replication data for: A simple and practical method to increase the infectivity of wild isolates of Plasmodium falciparum to mosquito vectors Plain Text - 889 B - MD5: 41b43b26deb8286d2538e4ff1f622d8d Data Dataset feeding rate (figure 2a)
infectivity_fig3.txt Apr 29, 2024 - R script and replication data for: A simple and practical method to increase the infectivity of wild isolates of Plasmodium falciparum to mosquito vectors Plain Text - 44.7 KB - MD5: 3b0c00e4eaf7064030cc4ffa53a80332 Data Dataset infectivity (figure 3a,b)
mortality_fig2b.txt Apr 29, 2024 - R script and replication data for: A simple and practical method to increase the infectivity of wild isolates of Plasmodium falciparum to mosquito vectors Plain Text - 51.1 KB - MD5: 04f0e27465d319a3d9ba3b66ff9e6702 Data Dataset mosquito mortality (figure 2b)

S1_Introduction_to_R_Passeport.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 971.1 KB -

CodeDocumentation

This file show a very brief introduction to R with basic command lines used to import and explore a passport data. We used the passport file associated to the GBS analysis of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an...

S2_filter_VCF.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 1.9 MB -

CodeDocumentation

This file show an introduction to VCF filtering with GBS data using R. We used the datset of West-African pearl millet accessions (Berthouly-Salazar et al. 2016). This file has been created with an Rmarkdown file (.Rmd). The Data dictionary is included in the file.

S3_Genetic_diversity+structure.html

May 16, 2024 - High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)

HTML - 4.3 MB -

CodeDocumentation

In this R tutorial, we we will take a processed VCF. First, we will explore diversity through: polymorphic SNPs (required packages: adegenet), allele frequencies (required packages: adegenet), private and shared alleles (required packages: poppr), allelic richness (required packa...

0_ReadMe.txt

May 13, 2024 - Prospective evaluation of the specificity of serological tests for Human African Trypanosomiasis: documentation and data

Plain Text - 3.9 KB -

Documentation

Dataset citation, description and terms of use.

0_ReadMe.txt

May 13, 2024 - Water discharge and water level output from the MAGE 1D hydrodynamic model for the Saigon and Dongnai rivers, Vietnam, 2016-2022

Plain Text - 1.5 KB -

Documentation

Dataset citation, description and terms of use.

0_Readme.txt

May 3, 2024 - Grand âge et VIH au Cameroun et au Sénégal, anthropologie du vieillissement et de la maladie (2022-2024)