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AMAPVox Source Code
AMAPVox Source Code
Mar 11, 2026 - AMAPVox
Verley, Philippe, 2026, "AMAPVox Source Code", https://doi.org/10.23708/43WFZO, DataSuds, V2
AMAPVox is a LiDAR voxelization software designed for ecological and forestry applications. This dataset provides the source code for AMAPVox, corresponding to the v2.4.2 release (tagged in the AMAPVox repository on the IRD Forge).
AMAPVox-v2.4.2.tar
Mar 11, 2026 - AMAPVox Source Code
TAR Archive - 77.3 MB - MD5: 4210d0dbc83a29b385f079843a8c637f
Supporting data and scripts produced by the GraTools software
Supporting data and scripts produced by the GraTools software
Mar 10, 2026 - gratools
Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1
Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
gratools_rice_analysis_commands.md
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327
Documentation
This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
supporting_data_README.txt
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Plain Text - 375 B - MD5: 0102ef91632371fc7f58d2a6ff2bcbd9
Documentation
describes the contents of the repository
get_seglen_frombam.py
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
print_venn_gratools.R
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
README
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Plain Text - 2.1 KB - MD5: 24b9cee6403fbab6f7d945cdee151346
Documentation
contains information describing each script available in this repository
script_jap_ind.sh
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Shell Script - 1.0 KB - MD5: a52ca15e3c8d29b76e4828439be17001
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
venn_gratools.py
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
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