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3,371 to 3,380 of 7,259 Results

Porpoises_NA_Unique_haplotypes.fasta Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Unknown - 469.4 KB - MD5: a82b8e6724f8492893f54daf714c9543 Data Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...
RainCell_Bamako20190516_qmax_event.txt Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 107.1 MB - MD5: c7877b143340dab9f06f17803716c20d Data Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999
RainCell_Bamako20190516_overbank.txt Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 106.6 MB - MD5: 915ca27b5fa2333d7749ff66ce5f8e92 Data Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999
RainCell_Bamako20190516_Map_REX.pdf Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali Adobe PDF - 2.8 MB - MD5: 48e52c57dee79a47a9e98f67e5033f41 Data Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).
PHIM_ xisRNA_ancillaryInputData.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 5.0 MB - MD5: 8f147c6903729a14cfa76cb3237d17c6 Data Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.
PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Plain Text - 46.4 KB - MD5: e5a17d624409c0fd6ecce49ba7f7ab0a Data Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...
PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Adobe PDF - 38.0 KB - MD5: e4c59802a37fb02dc0e4ac16e26bdfbb Documentation Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

Porpoises_NA_Unique_haplotypes.fasta

Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Unknown - 469.4 KB -

Data

Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...

RainCell_Bamako20190516_qmax_event.txt

Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 107.1 MB -

Data

Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999

RainCell_Bamako20190516_overbank.txt

Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 106.6 MB -

Data

Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999

RainCell_Bamako20190516_Map_REX.pdf

Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

Adobe PDF - 2.8 MB -

Data

Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).

PHIM_ xisRNA_ancillaryInputData.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 5.0 MB -

Data

Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Plain Text - 46.4 KB -

Data

Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

PHIM_ xisRNA_xisRNA001_majorUniqueReadsMsa.pdf

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Adobe PDF - 38.0 KB -

Documentation

Multiple sequences alignment of the three most abundant unique read signatures for each strand of the xisRNA001 locus as well as the sequence of the annotated MSU locus transcript in this window.

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