DataSuds

Metrics

126,756 Downloads

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

License: Custom Terms

6,471 to 6,480 of 7,219 Results

random_number.py Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Python Source Code - 1.2 KB - MD5: acfd75a55d7296be44e476b842408231 Code Python script used to select randomly sequences from a fasta file. This script is used to conduct the rarefaction analysis. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9).
skyline_beast.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 872 B - MD5: 55a14528fb89152ed013e14964f94266 Code Bash script used to run BEAST software and reconstruct the skyline plots. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
skyline_file.xml Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum XML - 198.1 KB - MD5: 820c82a0bb4b3688607eaa051a8a6375 Data Input file used in skyline_beast.sh to run the skyline plot analysis in BEAST software which estimates the variation of the effective population size through time. This file was created with BEAUti program of BEAST See details in Ben Chehida et al. (2020, Scientific Reports, DOI:...
Trimmomatics.sh Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum Shell Script - 1.3 KB - MD5: a2cc3c42e514b85eb265f66c33f2a88c Code Bash script used to clean the raw read (fastq format) with trimmomatic. Additional information is provided in Text S1 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)
AQP_PgPIP1-1.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 165.3 KB - MD5: e25597696c37b79fd9c4e96d8c318e98 Data Protein data bank file for Plasma Membrane Intrinsic Protein 1-1 from pearl millet
AQP_PgPIP1-3.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 163.9 KB - MD5: 6c7b3408aed3bf5532a5185c472a8404 Data Protein data bank file for Plasma Membrane Intrinsic Protein 1-3 from pearl millet
AQP_PgPIP1-4.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 159.1 KB - MD5: 5f59cd505e34ea0be0cca8aa280c1034 Data Protein data bank file for Plasma Membrane Intrinsic Protein 1-4 from pearl millet
AQP_PgPIP2-1.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 156.9 KB - MD5: 7c8a59c3151e0e419a88789a82ba3033 Data Protein data bank file for Plasma Membrane Intrinsic Protein 2-1 from pearl millet
AQP_PgPIP2-2.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 167.3 KB - MD5: 6101597ceb393e0e79521ab9d1526d53 Data Protein data bank file for Plasma Membrane Intrinsic Protein 2-2 from pearl millet
AQP_PgPIP2-3.pdb Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences chemical/x-pdb - 158.9 KB - MD5: dd7a6143eb098d20012021be84c24a82 Data Protein data bank file for Plasma Membrane Intrinsic Protein 2-3 from pearl millet

random_number.py

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Python Source Code - 1.2 KB -

Code

Python script used to select randomly sequences from a fasta file. This script is used to conduct the rarefaction analysis. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9).

skyline_beast.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 872 B -

Code

Bash script used to run BEAST software and reconstruct the skyline plots. See details in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

skyline_file.xml

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

XML - 198.1 KB -

Data

Input file used in skyline_beast.sh to run the skyline plot analysis in BEAST software which estimates the variation of the effective population size through time. This file was created with BEAUti program of BEAST See details in Ben Chehida et al. (2020, Scientific Reports, DOI:...

Trimmomatics.sh

Sep 4, 2020 - Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum

Shell Script - 1.3 KB -

Code

Bash script used to clean the raw read (fastq format) with trimmomatic. Additional information is provided in Text S1 in Ben Chehida et al. (2020, Scientific Reports, DOI: 10.1038/s41598-020-71603-9)

AQP_PgPIP1-1.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 165.3 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 1-1 from pearl millet

AQP_PgPIP1-3.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 163.9 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 1-3 from pearl millet

AQP_PgPIP1-4.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 159.1 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 1-4 from pearl millet

AQP_PgPIP2-1.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 156.9 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 2-1 from pearl millet

AQP_PgPIP2-2.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 167.3 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 2-2 from pearl millet

AQP_PgPIP2-3.pdb

Sep 2, 2020 - Aquaporins in Pearl Millet: genomic, coding and protein sequences

chemical/x-pdb - 158.9 KB -

Data

Protein data bank file for Plasma Membrane Intrinsic Protein 2-3 from pearl millet

Add Data

Share Dataverse

Link Dataverse

Reset Modifications