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Metadata Source: DataSuds

3,841 to 3,850 of 7,747 Results

Porpoises_NA_Microsatellite_data_cleaned.tab Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Tabular Data - 100.6 KB - 25 Variables, 925 Observations - UNF:6:j1jcc4A1Rs+FEedPbYzYIQ== Data File providing the identifier, geographical group, local sub-group, latitude, longitude, and the genotypes at the 10 microsatellites for 925 harbor porpoises (i.e. individuals with ≤40% of missing data). This dataset was used in all the analyses but the sPCA. The sPCA analysis us...
Porpoises_NA_Unique_haplotypes.fasta Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications Unknown - 469.4 KB - MD5: a82b8e6724f8492893f54daf714c9543 Data Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...
RainCell_Bamako20190516_qmax_event.txt Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 107.1 MB - MD5: c7877b143340dab9f06f17803716c20d Data Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999
RainCell_Bamako20190516_overbank.txt Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali Plain Text - 106.6 MB - MD5: 915ca27b5fa2333d7749ff66ce5f8e92 Data Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999
RainCell_Bamako20190516_Map_REX.pdf Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali Adobe PDF - 2.8 MB - MD5: 48e52c57dee79a47a9e98f67e5033f41 Data Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).
PHIM_ xisRNA_ancillaryInputData.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 5.0 MB - MD5: 8f147c6903729a14cfa76cb3237d17c6 Data Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.
PHIM_ xisRNA_coveragePlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 31.9 MB - MD5: 72245fe84113b55b54efa77c44c87308 Plot Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.
PHIM_ xisRNA_domainsPlots.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 944.3 KB - MD5: bd5265d4a84d85a6bc13f363e8f5cb1f Plot Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_iprScan.zip Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" ZIP Archive - 1.8 MB - MD5: 5350dacb2c14b070cd1cac19066692b4 Data Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences
PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection" Plain Text - 46.4 KB - MD5: e5a17d624409c0fd6ecce49ba7f7ab0a Data Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

Porpoises_NA_Microsatellite_data_cleaned.tab

Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Tabular Data - 100.6 KB - 25 Variables, 925 Observations -

Data

File providing the identifier, geographical group, local sub-group, latitude, longitude, and the genotypes at the 10 microsatellites for 925 harbor porpoises (i.e. individuals with ≤40% of missing data). This dataset was used in all the analyses but the sPCA. The sPCA analysis us...

Porpoises_NA_Unique_haplotypes.fasta

Mar 11, 2021 - Replication data for: No leading-edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications

Unknown - 469.4 KB -

Data

Fasta alignment of 111 unique mitochondrial DNA haplotypes (110 harbor porpoises and 1 Dall's porpoise). This alignment contains five mitochondrial coding regions (CytB, ATP6, ATP8, ND5, and COXI). These unique sequences were used to infer the phylogenetic tree. For further detai...

RainCell_Bamako20190516_qmax_event.txt

Mar 10, 2021 - Simulated peak flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 107.1 MB -

Data

Simulated peakflow (liters per second). Raster file in ASCII ESRI format ; missing data coded as -9999

RainCell_Bamako20190516_overbank.txt

Mar 9, 2021 - Simulated overbank flow for the May 16 2019 flood event in Bamako, Mali

Plain Text - 106.6 MB -

Data

Overbank flow (maximum peakflow: liters per seconds). Raster file in ASCII ESRI format ; missing data coded as -9999

RainCell_Bamako20190516_Map_REX.pdf

Mar 5, 2021 - Experience feedback (REX) of the May 16 2019 flood event in Bamako, Mali

Adobe PDF - 2.8 MB -

Data

Map of flooded areas on 16 May 2019 in Bamako, Mali (carte des zones inondées lors de l'événement du 16 mai 2019).

PHIM_ xisRNA_ancillaryInputData.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 5.0 MB -

Data

Compressed directory with the gtf file of the MSU7 rice annotation for use in a R session with objects stored in the "session.RData" file.

PHIM_ xisRNA_coveragePlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 31.9 MB -

Plot

Compressed directory containing svg image files corresponding to mRNA-seq and sRNA-seq coverage data and annotation for individual xisRNA loci and overlapping rice MSU7 loci displayed at different scales.

PHIM_ xisRNA_domainsPlots.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 944.3 KB -

Plot

Compressed directory containing svg image files displaying InterProScan results along xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_iprScan.zip

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

ZIP Archive - 1.8 MB -

Data

Raw output files of the InterProScan search on xisRNA overlapping loci protein product sequences

PHIM_ xisRNA_xis_ci-genes_AGRIGO_GSEA_20200910.txt

Mar 5, 2021 - Supplementary information and source code for "An atypical class of non-coding small RNAs produced in rice leaves upon bacterial infection"

Plain Text - 46.4 KB -

Data

Original Singular Enrichment Analysis results file for GO Slim Gene ontology terms in the “Rice MSU7.0 nonTE gene” dataset on the AgriGO website (http://bioinfo.cau.edu.cn/agriGO/ - date: 10/09/2020) with the list of cis-gene identifiers and default parameter values (Fisher stati...

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