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Publication Year: 2021

161 to 170 of 309 Results

1_TtmappednewTtvar_biallelic.vcf.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 704.4 MB - MD5: 4461877afe51bc505f570808593aa7c0 Data Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.
2_Tursiops_unlinkedSNPs.beagle.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 85.1 MB - MD5: 8fe3f103955bdd7dd145c316dc008fe6 Data Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...
3_Tursiops_ALL.haplo.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 108.0 MB - MD5: e7909efb3649e2ac35f3cb17268be917 Data haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...
4_GhostAncestry-master.tar.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 8.8 KB - MD5: d5234dbb967ad08679ed0eb346e3308e Code GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...
Tursiop_samples_ALL.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 351 B - MD5: 8b7e2ce3192a5f460626c00d41c18f65 Data Names of the samples and their order. See materials and methods and supplementary material for details on data generation
Tursiop_samples_no7Tt182.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 344 B - MD5: 734cebd2c7212d5a5b48cead8ebd0d42 Data Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation
Pole SAND(IRD, Cirad, INRAE, Montpellier SupAgro, Ciheam-IAMM) Aug 25, 2021UMR MoISA Vers une Sécurité Alimentaire et Nutritionnelle Durable des populations
UMR MoISA(Cirad, INRAE, IRD, Montpellier SupAgro, Ciheam-IAMM) Aug 25, 2021 Montpellier Interdisciplinary research center on Sustainable Agri-food systems L'UMR MoISA s'intéresse aux problématiques liées aux stratégies d'acteurs, qu'ils soient privés ou publics, individuels (consommateurs) ou collectifs (groupes sociaux de production marchande ou non mar...
PVR_00_D1-metadonnees.pdf Jul 21, 2021 - Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude Adobe PDF - 5.8 MB - MD5: 7a65c2083ab7afac1b152c8277dd2fed Documentation Description du jeu de données et de l'ensemble des documents.
PVR_01_P-synthese.pdf Jul 21, 2021 - Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude Adobe PDF - 8.0 MB - MD5: 53f0f6e8f8c7f9dedd0efa6d6fa3683f Documentation Synthèse paysagère : cartographie des paysages de la zone d’étude.

1_TtmappednewTtvar_biallelic.vcf.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 704.4 MB -

Data

Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.

2_Tursiops_unlinkedSNPs.beagle.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 85.1 MB -

Data

Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...

3_Tursiops_ALL.haplo.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 108.0 MB -

Data

haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...

4_GhostAncestry-master.tar.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 8.8 KB -

Code

GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...

Tursiop_samples_ALL.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 351 B -

Data

Names of the samples and their order. See materials and methods and supplementary material for details on data generation

Tursiop_samples_no7Tt182.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 344 B -

Data

Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation

Pole SAND(IRD, Cirad, INRAE, Montpellier SupAgro, Ciheam-IAMM)

Aug 25, 2021UMR MoISA

Vers une Sécurité Alimentaire et Nutritionnelle Durable des populations

UMR MoISA(Cirad, INRAE, IRD, Montpellier SupAgro, Ciheam-IAMM)

Aug 25, 2021

Montpellier Interdisciplinary research center on Sustainable Agri-food systems L'UMR MoISA s'intéresse aux problématiques liées aux stratégies d'acteurs, qu'ils soient privés ou publics, individuels (consommateurs) ou collectifs (groupes sociaux de production marchande ou non mar...

PVR_00_D1-metadonnees.pdf

Jul 21, 2021 - Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude

Adobe PDF - 5.8 MB -

Documentation

Description du jeu de données et de l'ensemble des documents.

PVR_01_P-synthese.pdf

Jul 21, 2021 - Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude

Adobe PDF - 8.0 MB -

Documentation

Synthèse paysagère : cartographie des paysages de la zone d’étude.

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