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Publication Year: 2023

221 to 230 of 631 Results

ABC.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 10.3 MB - MD5: d32b0bbf2afabe5602cdfb5e6347f7db CodeData Input data and scripts required to replicate the demographic inference by Approximate Bayesian Computation (ABC) using the FastSimcoal coalescent simulator, arlumstat, and the abcrf R package. To uncompress, type "tar xzvf ABC.tar.gz"
Alignments.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 19.7 KB - MD5: cd98e94dec3f1ce700286915ecb8631e Data Mitochondrial DNA sequence alignments generated in the present study. Nexus (with unique haplotypes) and FASTA alignment are provided. To uncompress, type "tar xzvf Alignments.tar.gz"
BenChehida_et_al2023_Iberian_porpoises_mtDNA_README.txt Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Plain Text - 3.3 KB - MD5: bba418785eee201deba36e13b6c4c8fb Documentation Dataset description, citation and terms of use
FST.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 20.8 KB - MD5: e24fa2e28975020c8f445b2ec79fc5e6 CodeData Input data and scripts used to compute the Hudson et al 1992 estimator of FST as well as the Excoffier et al 1992 estimator of PhiST. To uncompress, type "tar xzvf FST.tar.gz"
Haplotype_diversity.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 21.6 KB - MD5: 0034569f5c0ec472d94cf2b5530d77a2 CodeData Input data and script used to compute haplotype diversity in each population for Table 1. To uncompress, type "tar xzvf Haplotype_diversity.tar.gz"
Phylogenetic_tree.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 2.1 MB - MD5: 9006ed11c813d0a9216ab1d3d3f231f9 Data Input data and settings used to build the phylogenetic tree. To uncompress, type "tar xzvf Phylogenetic_tree.tar.gz"
Rarefaction.tar.gz Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years Gzip Archive - 33.5 KB - MD5: b247f1ff7cd9314f6b72acb236e2ec84 CodeData Input data and script to replicate the rarefaction analysis for the estimators of mtDNA genetic diversity. To uncompress, type "tar xzvf Rarefaction.tar.gz"
df_BeeConnected_Scales_DE.RData Sep 21, 2023 - Data of beehive connected scales across Europe R Data - 34.7 MB - MD5: 83ba9afb2808e2b2084b09ba3670c0ae
df_BeeConnected_Scales_FR.RData Sep 21, 2023 - Data of beehive connected scales across Europe R Data - 34.6 MB - MD5: 19d69ee81611b6a1f60404ab83f71edb
df_BeeConnected_Scales_GR.RData Sep 21, 2023 - Data of beehive connected scales across Europe R Data - 68.3 MB - MD5: 8e944f91fd91552e9bf440000a39c666

ABC.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 10.3 MB -

CodeData

Input data and scripts required to replicate the demographic inference by Approximate Bayesian Computation (ABC) using the FastSimcoal coalescent simulator, arlumstat, and the abcrf R package. To uncompress, type "tar xzvf ABC.tar.gz"

Alignments.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 19.7 KB -

Data

Mitochondrial DNA sequence alignments generated in the present study. Nexus (with unique haplotypes) and FASTA alignment are provided. To uncompress, type "tar xzvf Alignments.tar.gz"

BenChehida_et_al2023_Iberian_porpoises_mtDNA_README.txt

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Plain Text - 3.3 KB -

Documentation

Dataset description, citation and terms of use

FST.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 20.8 KB -

CodeData

Input data and scripts used to compute the Hudson et al 1992 estimator of FST as well as the Excoffier et al 1992 estimator of PhiST. To uncompress, type "tar xzvf FST.tar.gz"

Haplotype_diversity.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 21.6 KB -

CodeData

Input data and script used to compute haplotype diversity in each population for Table 1. To uncompress, type "tar xzvf Haplotype_diversity.tar.gz"

Phylogenetic_tree.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 2.1 MB -

Data

Input data and settings used to build the phylogenetic tree. To uncompress, type "tar xzvf Phylogenetic_tree.tar.gz"

Rarefaction.tar.gz

Sep 22, 2023 - Replication data and scripts for: Harbor porpoise losing its edge: genetic time series suggests a rapid population decline in Iberian waters over the last 30 years

Gzip Archive - 33.5 KB -

CodeData

Input data and script to replicate the rarefaction analysis for the estimators of mtDNA genetic diversity. To uncompress, type "tar xzvf Rarefaction.tar.gz"

df_BeeConnected_Scales_DE.RData

Sep 21, 2023 - Data of beehive connected scales across Europe

R Data - 34.7 MB -

df_BeeConnected_Scales_FR.RData

Sep 21, 2023 - Data of beehive connected scales across Europe

R Data - 34.6 MB -

df_BeeConnected_Scales_GR.RData

Sep 21, 2023 - Data of beehive connected scales across Europe

R Data - 68.3 MB -

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