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Publication Year: 2025

1 to 10 of 1,252 Results

readme_data.txt Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 5.4 KB - MD5: 3754471d5b9f8b8e5bd6739a2cfe643f Documentation Contains a description of all files in this dataset.
O157_H7_EC4115_0a2c271.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 5.4 MB - MD5: cbf164a04f045bcb8b669b1897d56ee0 Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.
O157_H7_EC4115_0a2c271_grannot.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.6 MB - MD5: dc9764aaead09be486297f1466bc4ef7 Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.
O157_H7_EC4115_0a2c271_liftoff.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.3 MB - MD5: c855c9ae86eeec6061576058aa1273bf Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.
S88_fa4fe08.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.9 MB - MD5: 726296987f982677091183f37748ed1a Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.
athaliana_grannot.tar.gz Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Gzip Archive - 244.8 MB - MD5: 1d22e11c2e9b8348811efd77a13bf4cd Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.
grannot_analysis_command_lines.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 8.1 KB - MD5: 6f5be639cf4f13c66772a12e41b711f2 Documentation Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF
readme_outputs.txt Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 4.9 KB - MD5: 55ecaf7ec9b62c3778d5866dfde2d81b Documentation Contains a description of all folders in this dataset.
liftoff_o157h7_to_s88.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 2.9 MB - MD5: 16c7a8c67ec05111e9d9c98e4e4b906a annotation transferred by Liftoff
S88_fa4fe08.gff Oct 29, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 1.8 MB - MD5: 7ecf8459a73585ee129b054d09b00c20 annotation transferred by GrAnnoT

readme_data.txt

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 5.4 KB -

Documentation

Contains a description of all files in this dataset.

O157_H7_EC4115_0a2c271.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 5.4 MB -

Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.

O157_H7_EC4115_0a2c271_grannot.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.6 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.

O157_H7_EC4115_0a2c271_liftoff.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.3 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.

S88_fa4fe08.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.9 MB -

Fasta file of the genome S88_fa4fe08, NCBI ID: NC_011742.1.

athaliana_grannot.tar.gz

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Gzip Archive - 244.8 MB -

Archive containing the results of the transfer on A.thaliana graph with GrAnnoT.

grannot_analysis_command_lines.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 8.1 KB -

Documentation

Contains all the command lines used to produce the files in this dataset. The input data is available at : https://doi.org/10.23708/DO1RTF

readme_outputs.txt

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 4.9 KB -

Documentation

Contains a description of all folders in this dataset.

liftoff_o157h7_to_s88.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 2.9 MB -

annotation transferred by Liftoff

S88_fa4fe08.gff

Oct 29, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 1.8 MB -

annotation transferred by GrAnnoT

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