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Publication Year: 2025

981 to 990 of 1,316 Results

GrAnnoT source code and scripts Mar 20, 2025 - GrAnnoT Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2 GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main
ReadMe.txt Mar 20, 2025 - GrAnnoT source code and scripts Plain Text - 516 B - MD5: 25f858eade603eac11fdeab6de8f5863 Documentation Data citation, description and terms of use
ReadMe.txt Mar 20, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 499 B - MD5: 683ef0fb3b9ffa3088f3c14f327409b3 Documentation Data citation, description and terms of use
ReadMe.txt Mar 20, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 488 B - MD5: e92eb31e2015df3e015c0b4f9fec78b2 Documentation Data citation, description and terms of use
HumanChr1Graph_renamePaths.gfa Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.5 GB - MD5: 1db6205a09ea265f3385744974113906 Data Human chromosome 1 pangenome graph made by the Human Pangenome Reference Consortium, and available at https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=pangenomes/scratch/2022_03_11_minigraph_cactus/.
RiceGraph_MGC.gfa Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.1 GB - MD5: 17cccb331973224bd4073066369cf1f2 Data Asian rice pangenome graph built with the Nipponbare genome from the paper from 2020 by Zhou, Y., Chebotarov, D., Kudrna, D. et al., "A platinum standard pan-genome resource that represents the population structure of Asian rice" (doi:10.1038/s41597-020-0438-2), and 12 other gen...
RiceGraph_MGC_paths.gfa Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.3 GB - MD5: f541072bfc36b01c4bb1609192c272b9 Data Pangenome graph adapted from the file "RiceGraph_MGC.gfa" by converting the walks into paths.
RiceGraph_MGC_refOs127652RS1.gfa Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.6 GB - MD5: e58d668a5ea6a6a2f2c8033032adcfb4 Data Pangenome graph built with the same data as the file "RiceGraph_MGC.gfa", but with a different genome used as reference (Os127652RS1).
RiceGraph_MGC_paths.xg Mar 18, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 4.3 GB - MD5: 3ac4d2629fafbc7ffa77ef106d417e84 Data Rice pangenome graph with paths converted in .xg format by VG.
Corn pest and climate monitoring dataset from Msambweni, Kwale, Kenya, 2022-2024 Mar 12, 2025 - Project ANR PI2P Rebaudo, Francois; Calatayud, Paul-André; Elesani, Beatrice; Vilio, Hassan Hamisi, 2025, "Corn pest and climate monitoring dataset from Msambweni, Kwale, Kenya, 2022-2024", https://doi.org/10.23708/SM7CWG, DataSuds, V1, UNF:6:1jml9hUmozbtFxEm4WmMqg== [fileUNF] This dataset corresponds to climate data and maize pests monitoring of Busseola fusca, Chilo partellus, and Spodoptera frugiperda between 2022 and 2024 at Msambweni (Kwale), Kenya (4°20’38”S, 39°29’21”E, altitude 20 masl). Trapping data include site name, survey date, species, nu...

GrAnnoT source code and scripts

Mar 20, 2025 - GrAnnoT

Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2

GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main

ReadMe.txt

Mar 20, 2025 - GrAnnoT source code and scripts

Plain Text - 516 B -

Documentation

Data citation, description and terms of use

ReadMe.txt

Mar 20, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 499 B -

Documentation

Data citation, description and terms of use

ReadMe.txt

Mar 20, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 488 B -

Documentation

Data citation, description and terms of use

HumanChr1Graph_renamePaths.gfa

Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.5 GB -

Data

Human chromosome 1 pangenome graph made by the Human Pangenome Reference Consortium, and available at https://s3-us-west-2.amazonaws.com/human-pangenomics/index.html?prefix=pangenomes/scratch/2022_03_11_minigraph_cactus/.

RiceGraph_MGC.gfa

Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.1 GB -

Data

Asian rice pangenome graph built with the Nipponbare genome from the paper from 2020 by Zhou, Y., Chebotarov, D., Kudrna, D. et al., "A platinum standard pan-genome resource that represents the population structure of Asian rice" (doi:10.1038/s41597-020-0438-2), and 12 other gen...

RiceGraph_MGC_paths.gfa

Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.3 GB -

Data

Pangenome graph adapted from the file "RiceGraph_MGC.gfa" by converting the walks into paths.

RiceGraph_MGC_refOs127652RS1.gfa

Mar 18, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.6 GB -

Data

Pangenome graph built with the same data as the file "RiceGraph_MGC.gfa", but with a different genome used as reference (Os127652RS1).

RiceGraph_MGC_paths.xg

Mar 18, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 4.3 GB -

Data

Rice pangenome graph with paths converted in .xg format by VG.

Corn pest and climate monitoring dataset from Msambweni, Kwale, Kenya, 2022-2024

Mar 12, 2025 - Project ANR PI2P

Rebaudo, Francois; Calatayud, Paul-André; Elesani, Beatrice; Vilio, Hassan Hamisi, 2025, "Corn pest and climate monitoring dataset from Msambweni, Kwale, Kenya, 2022-2024", https://doi.org/10.23708/SM7CWG, DataSuds, V1, UNF:6:1jml9hUmozbtFxEm4WmMqg== [fileUNF]

This dataset corresponds to climate data and maize pests monitoring of Busseola fusca, Chilo partellus, and Spodoptera frugiperda between 2022 and 2024 at Msambweni (Kwale), Kenya (4°20’38”S, 39°29’21”E, altitude 20 masl). Trapping data include site name, survey date, species, nu...

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