DataSuds

Metrics

126,756 Downloads

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Publication Year: 2025

981 to 990 of 1,253 Results

nb_allFeatures_renamepath_annotate.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 92.5 MB - MD5: f9a87d3c48157c180a641b65d0d89412 Data Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.
liftoff_transfer_chm13_to_grch38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 160.9 MB - MD5: a944747959786332e338b42bce913de8 Data Result of the human Chr1 annotation transfer by Liftoff
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
GRCh38.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 96.1 MB - MD5: 0f9debe9433625ca59709513e6d9edaf Data Result of the human Chr1 annotation transfer by GrAnnoT
reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 229.8 MB - MD5: 40ebe8ac4299a91fbcc080e0a35e725e Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
reference_all_to_target_all.sam Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 250.2 MB - MD5: da6adfa01f20e09d1f881ecf62d8ca71 Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
grannot.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 442.1 MB - MD5: 97e34b55bea7b31ca0047afcd1ceb41e Data Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.
AzucenaRS1.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 115.0 MB - MD5: 01f29a93b8ae3ed9ebfcbfd5589f46b2 Data Result of the first transfer by GrAnnoT for the back and forth comparison with Liftoff.
IRGSP.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 125.9 MB - MD5: 7d668cc43cd5f8b53beeb6d3b14c49a8 Data Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.
AzucenaRS1.gff3 Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 98.9 MB - MD5: eaa7a2f213413765c781bb859eea2a5d Data Result of the first transfer by Liftoff for the back and forth comparison with GrAnnoT.

nb_allFeatures_renamepath_annotate.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 92.5 MB -

Data

Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.

liftoff_transfer_chm13_to_grch38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 160.9 MB -

Data

Result of the human Chr1 annotation transfer by Liftoff

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

GRCh38.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 96.1 MB -

Data

Result of the human Chr1 annotation transfer by GrAnnoT

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 229.8 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

reference_all_to_target_all.sam

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 250.2 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

grannot.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 442.1 MB -

Data

Contains the output from GrAnnoT for the transfer between Nipponbare and AzucenaRS1 with the main graph (centered around Nipponbare) and with the graph centered around Os127652RS1.

AzucenaRS1.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 115.0 MB -

Data

Result of the first transfer by GrAnnoT for the back and forth comparison with Liftoff.

IRGSP.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 125.9 MB -

Data

Result of the second transfer by GrAnnoT for the back and forth comparison with Liftoff.

AzucenaRS1.gff3

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 98.9 MB -

Data

Result of the first transfer by Liftoff for the back and forth comparison with GrAnnoT.

Add Data

Share Dataverse

Link Dataverse

Reset Modifications