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Publication Year: 2026

151 to 160 of 257 Results

taxprof_ressouces.config Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 103 B - MD5: 653be8d086a3fe012cc314f1778222d6 Code Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.
Viroseek.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 537 B - MD5: 5f26695e80c215ec06a2d729eb968035 Code ViroSeek command script, used in this study.
ViroSeek_input.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 733 B - 3 Variables, 5 Observations - UNF:6:tyuLW2kmYZtk+8pIMV/RPQ== Données ViroSeek samples input file, companion file of Viroseek.sh.
Virustaxo.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 796 B - MD5: 0795e28824f2eea8ac17a2831eff3fa2 Code Virustaxo command script.
asv1.fasta Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 1.8 KB - MD5: b52e6799cb42ab36b725fcc187a8b056 Données Fasta file required for ViroSeek_downstream_analysis.rmd
compile2.py Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Python Source Code - 3.7 KB - MD5: 5b7a5150bc4f3414b6258c75ab30f952 Code Script for summarising for each taxonomic assignment
metadataencours.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 330 B - 6 Variables, 6 Observations - UNF:6:G/lBLbWcA/mrI8LJUMN5ww== Données Excel for ViroSeek_downstream_analysis.rmd
Viroseek_downstream_analysis.Rmd Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing R Notebook - 26.7 KB - MD5: 5388991cf49f2d17c247556d77e1860e Code Rmarkdown for downstream analysis
nextflow.config Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 4.9 KB - MD5: 538bb795c3b1d2357fb0b8d3eb09bd1a Code Configuration file for ViroSeek Nextflow execution.
ViroSeek.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 14.9 KB - MD5: d6ab166a9087903150a31e61072a1e08 Code Nextflow pipeline script for ViroSeek.

taxprof_ressouces.config

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 103 B -

Code

Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.

Viroseek.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 537 B -

Code

ViroSeek command script, used in this study.

ViroSeek_input.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 733 B - 3 Variables, 5 Observations -

Données

ViroSeek samples input file, companion file of Viroseek.sh.

Virustaxo.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 796 B -

Code

Virustaxo command script.

asv1.fasta

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 1.8 KB -

Données

Fasta file required for ViroSeek_downstream_analysis.rmd

compile2.py

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Python Source Code - 3.7 KB -

Code

Script for summarising for each taxonomic assignment

metadataencours.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 330 B - 6 Variables, 6 Observations -

Données

Excel for ViroSeek_downstream_analysis.rmd

Viroseek_downstream_analysis.Rmd

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

R Notebook - 26.7 KB -

Code

Rmarkdown for downstream analysis

nextflow.config

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 4.9 KB -

Code

Configuration file for ViroSeek Nextflow execution.

ViroSeek.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 14.9 KB -

Code

Nextflow pipeline script for ViroSeek.

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