DataSuds

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Publication Year: 2026

171 to 180 of 463 Results

AMAPVox Source Code Mar 11, 2026 - AMAPVox Verley, Philippe, 2026, "AMAPVox Source Code", https://doi.org/10.23708/43WFZO, DataSuds, V2 AMAPVox is a LiDAR voxelization software designed for ecological and forestry applications. This dataset provides the source code for AMAPVox, corresponding to the v2.4.2 release (tagged in the AMAPVox repository on the IRD Forge).
AMAPVox-v2.4.2.tar Mar 11, 2026 - AMAPVox Source Code TAR Archive - 77.3 MB - MD5: 4210d0dbc83a29b385f079843a8c637f
Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
get_seglen_frombam.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
gratools_core_dispensable_ratio_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 98.8 KB - MD5: c52a96e1a3a1c1fcfe49399c5030fc86 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_depth_nodes_stat_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 124.7 KB - MD5: 8a9f04f9ac34ae48143f1ec262218df2 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_rice_analysis_commands.md Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327 Documentation This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
gratools_stats_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 370.3 KB - MD5: e8eeed32f3adcea3d7e0cd1e6f805e96 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
print_venn_gratools.R Mar 10, 2026 - Supporting data and scripts produced by the GraTools software R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
README Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Plain Text - 2.1 KB - MD5: 24b9cee6403fbab6f7d945cdee151346 Documentation contains information describing each script available in this repository

AMAPVox Source Code

Mar 11, 2026 - AMAPVox

Verley, Philippe, 2026, "AMAPVox Source Code", https://doi.org/10.23708/43WFZO, DataSuds, V2

AMAPVox is a LiDAR voxelization software designed for ecological and forestry applications. This dataset provides the source code for AMAPVox, corresponding to the v2.4.2 release (tagged in the AMAPVox repository on the IRD Forge).

AMAPVox-v2.4.2.tar

Mar 11, 2026 - AMAPVox Source Code

TAR Archive - 77.3 MB -

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

get_seglen_frombam.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 3.3 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

gratools_core_dispensable_ratio_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 98.8 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_depth_nodes_stat_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 124.7 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_rice_analysis_commands.md

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Markdown Text - 33.9 KB -

Documentation

This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.

gratools_stats_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 370.3 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

print_venn_gratools.R

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

R Syntax - 947 B -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

README

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Plain Text - 2.1 KB -

Documentation

contains information describing each script available in this repository

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