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Publication Year: 2026

331 to 340 of 421 Results

ViroSeek.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 14.9 KB - MD5: d6ab166a9087903150a31e61072a1e08 Code Nextflow pipeline script for ViroSeek.
Viroseek.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 537 B - MD5: 5f26695e80c215ec06a2d729eb968035 Code ViroSeek command script, used in this study.
ViroSeek_use.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 3.7 KB - MD5: a227c3711141ee2641eacea0422e3066 Documentation Tutorial for running ViroSeek pipeline.
virus_genome_to_id.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 202 B - 2 Variables, 3 Observations - UNF:6:u5bQZ+jVWrdnqQ55z0s0Ug== Données Companion file for CAMISIM_script.sh (tsv version)
virus_metadata.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 242 B - 4 Variables, 4 Observations - UNF:6:zhJIrFmnz3PZU69+GdDv1w== Données Companion file for CAMISIM_script.sh (tsv version)
virus_mini_config.ini Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 1.0 KB - MD5: e9e88231f8769d4d40be1d77a9dbb801 Code Companion file for CAMISIM_script.sh
Virustaxo.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 796 B - MD5: 0795e28824f2eea8ac17a2831eff3fa2 Code Virustaxo command script.
Lepto_Spiral_Foa.txt Mar 3, 2026 - Pathogenic Leptospiral data and ANTILOPE rainfall data on the La Foa Pierrat watershed and gauging station (New Caledonia, SW Pacific), 2020-2024. Plain Text - 4.2 KB - MD5: 23b35fe6c24bed8edf8f539ba7e2ce8e Data Pathogenic Leptospira concentrations at the La Foa Pierrat gauging station
Rainfall_ANTILOPE_Foa.txt Mar 3, 2026 - Pathogenic Leptospiral data and ANTILOPE rainfall data on the La Foa Pierrat watershed and gauging station (New Caledonia, SW Pacific), 2020-2024. Plain Text - 1.4 MB - MD5: 8e9e744c49b52412c735440259712d3e Data Composite (radar + raingauge) rainfall data on the La Foa Pierrat watershed Discontinuities in the dataset are indicated by N/A
data_acquisition_protocol.pdf Mar 3, 2026 - Replication data for: Long-chain omega-3 fatty acids and metallic elements in small pelagic fish from South Africa from a human consumption perspective Adobe PDF - 267.6 KB - MD5: 819d8a90eb41cdb51d53770339dc6045 Documentation Data acquisition protocol (fish collection and biochemical analyses).

ViroSeek.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 14.9 KB -

Code

Nextflow pipeline script for ViroSeek.

Viroseek.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 537 B -

Code

ViroSeek command script, used in this study.

ViroSeek_use.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing