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Publication Year: 2026

341 to 350 of 457 Results

ReadMe_10-23708_LTXIKA.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 1.6 KB - MD5: ea8e34379c7dd2e422ee8c7cc3da5a9b Documentation contains the citation, description and conditions of use, or even access, depending on the case, to the dataset
ReadMe.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 2.9 KB - MD5: 1da614b01e6d144d9b8e429371ed6c4f Documentation contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
samtools.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 1.1 KB - MD5: c5246bbf7b8f446389b6dd4b2feba108 Code Modules for ViroSeek
spades.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 637 B - MD5: 9c01725862db0c87919a61d210fbea38 Code Modules for ViroSeek
taxonkit.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 585 B - MD5: 1176ab0876dfb3dc42f6349535cec6ca Code Modules for ViroSeek
taxprofiler_db.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 186 B - 4 Variables, 1 Observations - UNF:6:owXJ1TE2Pl/ttHdbzldF6g== Données taxprofiler database input file, companion file of Taxprofiler.sh.
taxprofiler_input.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 828 B - 6 Variables, 5 Observations - UNF:6:K/XMHKnbfbWmNFfjnqG7CA== Données taxprofiler samples input file, companion file of Taxprofiler.sh.
Taxprofiler.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 532 B - MD5: 0b1dba73a89694a8786f937eeffec0e4 Code Taxprofiler command script.
taxprof_ressouces.config Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 103 B - MD5: 653be8d086a3fe012cc314f1778222d6 Code Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.
trimgalore.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 608 B - MD5: b85ebab75a77b0fa51ff011d4e8daf9b Code Modules for ViroSeek

ReadMe_10-23708_LTXIKA.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 1.6 KB -

Documentation

contains the citation, description and conditions of use, or even access, depending on the case, to the dataset

ReadMe.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 2.9 KB -

Documentation

contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.

samtools.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 1.1 KB -

Code

Modules for ViroSeek

spades.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 637 B -

Code

Modules for ViroSeek

taxonkit.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 585 B -

Code

Modules for ViroSeek

taxprofiler_db.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 186 B - 4 Variables, 1 Observations -

Données

taxprofiler database input file, companion file of Taxprofiler.sh.

taxprofiler_input.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 828 B - 6 Variables, 5 Observations -

Données

taxprofiler samples input file, companion file of Taxprofiler.sh.

Taxprofiler.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 532 B -

Code

Taxprofiler command script.

taxprof_ressouces.config

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 103 B -

Code

Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.

trimgalore.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 608 B -

Code

Modules for ViroSeek

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