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351 to 360 of 463 Results
taxprof_ressouces.config
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 103 B - MD5: 653be8d086a3fe012cc314f1778222d6
Code
Configuration file for Taxprofiler execution, companion file of Taxprofiler.sh.
trimgalore.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 608 B - MD5: b85ebab75a77b0fa51ff011d4e8daf9b
Code
Modules for ViroSeek
Viroseek_downstream_analysis.Rmd
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
R Notebook - 26.7 KB - MD5: 5388991cf49f2d17c247556d77e1860e
Code
Rmarkdown for downstream analysis
ViroSeek_input.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 733 B - 3 Variables, 5 Observations - UNF:6:tyuLW2kmYZtk+8pIMV/RPQ==
Données
ViroSeek samples input file, companion file of Viroseek.sh.
ViroSeek_installation.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 4.1 KB - MD5: a1d94219484866a57a948d13881802b9
Documentation
Installation instructions for ViroSeek.
ViroSeek.nf
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 14.9 KB - MD5: d6ab166a9087903150a31e61072a1e08
Code
Nextflow pipeline script for ViroSeek.
Viroseek.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 537 B - MD5: 5f26695e80c215ec06a2d729eb968035
Code
ViroSeek command script, used in this study.
ViroSeek_use.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.7 KB - MD5: a227c3711141ee2641eacea0422e3066
Documentation
Tutorial for running ViroSeek pipeline.
virus_genome_to_id.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 202 B - 2 Variables, 3 Observations - UNF:6:u5bQZ+jVWrdnqQ55z0s0Ug==
Données
Companion file for CAMISIM_script.sh (tsv version)
virus_metadata.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 242 B - 4 Variables, 4 Observations - UNF:6:zhJIrFmnz3PZU69+GdDv1w==
Données
Companion file for CAMISIM_script.sh (tsv version)
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