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Publication Year: 2026

41 to 50 of 578 Results

windows_analysis.py Jul 30, 2026 - GranPa source code, v1 Python Source Code - 10.3 KB - MD5: a869705ba1bfcc4876e9e72bb4d59149
generate_ref.py Jul 30, 2026 - GranPa source code, v1 Python Source Code - 1.7 KB - MD5: 960b8d6cff21f335883295b493e5f8f2
granpa_simu.py Jul 30, 2026 - GranPa source code, v1 Python Source Code - 4.0 KB - MD5: 2961b13fa88633a84a8a89ec77dde633
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Jul 28, 2026 - UMR MIVEGEC Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V2, UNF:6:6xWLtYNtB6mlWqJirEWO9w== [fileUNF] This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...
ReadMe.txt Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 3.0 KB - MD5: f7a1adcb8164f01c0df6bdd70a6915e5 Documentation contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
Viralmetagenome.sh Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 308 B - MD5: 4df3fc615e6542de1cab355a3c856fd2 Code Viralmetagenome command script.
Viralmetagenome_input.tab Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 658 B - 3 Variables, 5 Observations - UNF:6:jTmqDDNM4j3t0aAGiilaCA== Données Viralmetagenome samples input file, companion file of Viralmetagenome.sh.
compile2.py Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Python Source Code - 3.7 KB - MD5: d35404f2eff0237f1839c10fdfeac401 Code Script for summarising for each taxonomic assignment
Viroseek_downstream_analysis2.0.Rmd Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing R Notebook - 84.3 KB - MD5: 4223f5eada029a205c9b71ebccf8d192 Code Rmarkdown for downstream analysis
nextflow.config Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 5.1 KB - MD5: cc93bbd9ed8fb4dac49680bf3e72b6fd Code Configuration file for ViroSeek Nextflow execution.

windows_analysis.py

Jul 30, 2026 - GranPa source code, v1

Python Source Code - 10.3 KB -

generate_ref.py

Jul 30, 2026 - GranPa source code, v1

Python Source Code - 1.7 KB -

granpa_simu.py

Jul 30, 2026 - GranPa source code, v1

Python Source Code - 4.0 KB -

Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Jul 28, 2026 - UMR MIVEGEC

Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V2, UNF:6:6xWLtYNtB6mlWqJirEWO9w== [fileUNF]

This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...

ReadMe.txt

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 3.0 KB -

Documentation

contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.

Viralmetagenome.sh

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 308 B -

Code

Viralmetagenome command script.

Viralmetagenome_input.tab

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 658 B - 3 Variables, 5 Observations -

Données

Viralmetagenome samples input file, companion file of Viralmetagenome.sh.

compile2.py

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Python Source Code - 3.7 KB -

Code

Script for summarising for each taxonomic assignment

Viroseek_downstream_analysis2.0.Rmd

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

R Notebook - 84.3 KB -

Code

Rmarkdown for downstream analysis

nextflow.config

Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 5.1 KB -

Code

Configuration file for ViroSeek Nextflow execution.

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