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GranPa Source Code(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026GranPA
GranPA(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026PANEEC Team
This dataverse contains the data, codes and command lines used for the GranPA v1 article
ReadMe.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.0 KB - MD5: f7a1adcb8164f01c0df6bdd70a6915e5
Documentation
contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
Viralmetagenome.sh
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 308 B - MD5: 4df3fc615e6542de1cab355a3c856fd2
Code
Viralmetagenome command script.
Viralmetagenome_input.tab
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 658 B - 3 Variables, 5 Observations - UNF:6:jTmqDDNM4j3t0aAGiilaCA==
Données
Viralmetagenome samples input file, companion file of Viralmetagenome.sh.
compile2.py
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Python Source Code - 3.7 KB - MD5: d35404f2eff0237f1839c10fdfeac401
Code
Script for summarising for each taxonomic assignment
Viroseek_downstream_analysis2.0.Rmd
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
R Notebook - 84.3 KB - MD5: 4223f5eada029a205c9b71ebccf8d192
Code
Rmarkdown for downstream analysis
nextflow.config
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 5.1 KB - MD5: cc93bbd9ed8fb4dac49680bf3e72b6fd
Code
Configuration file for ViroSeek Nextflow execution.
ViroSeek.nf
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Nextflow Script - 19.0 KB - MD5: bb066b58a76dc650fbac505c952367ea
Code
Nextflow pipeline script for ViroSeek.
ViroSeek_installation.txt
Jul 28, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 3.3 KB - MD5: f5897ee7f60af645bc78c137f81219c2
Documentation
Installation instructions for ViroSeek.
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