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Publication Status: Published

181 to 190 of 9,560 Results

SDNR_timeseries_QC.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 186.5 KB - 50 Variables, 894 Observations - UNF:6:0Bx8aFoTVeP8tRQGdLkuuQ== Données - Quality-controlled biweekly time series - Includes QC flags for all parameters - Output of 02_qc_flags.py - PRIMARY DATA FILE FOR USERS - File size: ~185 KB
SDNR_timeseries_standardized.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 149.8 KB - 29 Variables, 894 Observations - UNF:6:UICCsS21y13bmjNxJ2tyqA== Données - Harmonized biweekly time series (2015-2025) - 894 observations, 4 stations (HA, PC, BD, BK) - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~147 KB
SDNR_transects_QC.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 29.6 KB - 45 Variables, 162 Observations - UNF:6:aHx3OEqwNpLIg2Hn8NRtYg== Données - Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - PRIMARY DATA FILE FOR USERS - File size: ~30 KB
SDNR_transects_standardized.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 23.8 KB - 26 Variables, 162 Observations - UNF:6:ii2FAPWT4tpdMZPifowkaA== Données - Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB
_shared.py Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Python Source Code - 7.0 KB - MD5: 04013112f3454eff2ad5716365719c83 Code
station_metadata.tab Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam Tabular Data - 354 B - 3 Variables, 4 Observations - UNF:6:rd+suLd8zavZVSIsvgXulQ== Documentation - Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics
Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Mar 4, 2026 - UMR MIVEGEC Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V1, UNF:6:v6tEqVWAwrDj6vZeLCHY6A== [fileUNF] This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...
probe_panel.fasta Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 2.0 MB - MD5: 79cd3dfa2761d332bb245d80c80d797c Données Virals sequences used for probes design
ReadMe.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 2.9 KB - MD5: 1da614b01e6d144d9b8e429371ed6c4f Documentation contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
ReadMe_10-23708_LTXIKA.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 1.6 KB - MD5: ea8e34379c7dd2e422ee8c7cc3da5a9b Documentation contains the citation, description and conditions of use, or even access, depending on the case, to the dataset

SDNR_timeseries_QC.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 186.5 KB - 50 Variables, 894 Observations -

Données

- Quality-controlled biweekly time series - Includes QC flags for all parameters - Output of 02_qc_flags.py - **PRIMARY DATA FILE FOR USERS** - File size: ~185 KB

SDNR_timeseries_standardized.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 149.8 KB - 29 Variables, 894 Observations -

Données

- Harmonized biweekly time series (2015-2025) - 894 observations, 4 stations (HA, PC, BD, BK) - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~147 KB

SDNR_transects_QC.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 29.6 KB - 45 Variables, 162 Observations -

Données

- Quality-controlled transect data - Includes QC flags for all parameters - Output of 02_qc_flags.py - **PRIMARY DATA FILE FOR USERS** - File size: ~30 KB

SDNR_transects_standardized.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 23.8 KB - 26 Variables, 162 Observations -

Données

- Harmonized longitudinal transects (2017-2022) - 162 observations, 27 sites - Output of 01_load_standardize.py - No QC flags; raw measurements only - File size: ~24 KB

_shared.py

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Python Source Code - 7.0 KB -

Code

station_metadata.tab

Mar 5, 2026 - Ten years of biogeochemical monitoring in the highly urbanized tropical Saigon-Dong Nai River estuary (2015-2025), Vietnam

Tabular Data - 354 B - 3 Variables, 4 Observations -

Documentation

- Spatial organization of sampling sites/stations - Site groupings: upstream (UP01-UP04), urban corridor (SG01-SG10), urban core (SG11-SG16), estuarine zone (SG17-SG23) - Fixed stations: HA, PC, BD, BK with characteristics

Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Mar 4, 2026 - UMR MIVEGEC

Berger, Audric; Lefebvre, Margaux; Dainat, Jacques; Jiolle, Davy; Conclois, Isabelle; Talignani, Loic; Mastriani, Emilio; Cornelie, Sylvie; Berthet, Nicolas; Paupy, Christophe, 2026, "Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing", https://doi.org/10.23708/LTXIKA, DataSuds, V1, UNF:6:v6tEqVWAwrDj6vZeLCHY6A== [fileUNF]

This repository contains all the files needed to reproduce the results of the article "ViroSeek: a viral detection pipeline for second-generation sequencing", including the files needed to run the ViroSeek pipeline. ViroSeek is a simplified bioinformatics pipeline for the taxonom...

probe_panel.fasta

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 2.0 MB -

Données

Virals sequences used for probes design

ReadMe.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 2.9 KB -

Documentation

contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.

ReadMe_10-23708_LTXIKA.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 1.6 KB -

Documentation

contains the citation, description and conditions of use, or even access, depending on the case, to the dataset

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