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Publication Status: Published

351 to 360 of 8,216 Results

Ippy02.fasta Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 7.3 KB - MD5: e2cd8bd7437abe2993f2c5b41c4d5d0b Données Companion file for CAMISIM_script.sh
metadataencours.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 330 B - 6 Variables, 6 Observations - UNF:6:G/lBLbWcA/mrI8LJUMN5ww== Données Excel for ViroSeek_downstream_analysis.rmd
metadenovo_db.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 276 B - 6 Variables, 1 Observations - UNF:6:suOpByxClQwSuKRC5Qn/qw== Données Metadenovo database input file, companion of Metadenovo.sh
metadenovo_input.tab Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Tabular Data - 733 B - 3 Variables, 5 Observations - UNF:6:tyuLW2kmYZtk+8pIMV/RPQ== Données Metadenovo samples input file, companion of Metadenovo.sh
Metadenovo.sh Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Shell Script - 415 B - MD5: 3c765273fb00cff6b336606f9ff8a1ba Code Metadenovo command script when tested in this study.
minimap2.nf Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Nextflow Script - 541 B - MD5: 7663be48edce58e4303d6e1b4017cde5 Code Modules for ViroSeek
nextflow.config Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 4.9 KB - MD5: 538bb795c3b1d2357fb0b8d3eb09bd1a Code Configuration file for ViroSeek Nextflow execution.
probe_panel.fasta Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Unknown - 2.0 MB - MD5: 79cd3dfa2761d332bb245d80c80d797c Données Virals sequences used for probes design
ReadMe_10-23708_LTXIKA.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 1.6 KB - MD5: ea8e34379c7dd2e422ee8c7cc3da5a9b Documentation contains the citation, description and conditions of use, or even access, depending on the case, to the dataset
ReadMe.txt Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing Plain Text - 2.9 KB - MD5: 1da614b01e6d144d9b8e429371ed6c4f Documentation contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.

Ippy02.fasta

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 7.3 KB -

Données

Companion file for CAMISIM_script.sh

metadataencours.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 330 B - 6 Variables, 6 Observations -

Données

Excel for ViroSeek_downstream_analysis.rmd

metadenovo_db.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 276 B - 6 Variables, 1 Observations -

Données

Metadenovo database input file, companion of Metadenovo.sh

metadenovo_input.tab

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Tabular Data - 733 B - 3 Variables, 5 Observations -

Données

Metadenovo samples input file, companion of Metadenovo.sh

Metadenovo.sh

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Shell Script - 415 B -

Code

Metadenovo command script when tested in this study.

minimap2.nf

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Nextflow Script - 541 B -

Code

Modules for ViroSeek

nextflow.config

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 4.9 KB -

Code

Configuration file for ViroSeek Nextflow execution.

probe_panel.fasta

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Unknown - 2.0 MB -

Données

Virals sequences used for probes design

ReadMe_10-23708_LTXIKA.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 1.6 KB -

Documentation

contains the citation, description and conditions of use, or even access, depending on the case, to the dataset

ReadMe.txt

Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing

Plain Text - 2.9 KB -

Documentation

contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.

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