Research Unit "Host-Vector-Parasite-Environment Interactions in Neglected Tropical Diseases due to Trypanosomatids"

(in French : Unité Mixte de Recherche "Interactions Hôte-Vecteur-Parasite-Environnement dans les maladies tropicales négligées dues aux Trypanosomatidae")

INTERTRYP is a joint research unit (IRD/CIRAD) based in Montpellier, dedicated to the control of human and animal diseases caused by Trypanosomatids. INTERTRYP is a Collaborating Center of the WHO for the Human African Trypanosomiasis. The Cirad via INTERTRYP is the Reference Laboratory of the OIE on the "Animal African Trypanosomoses".

Scientific project. With its partners in Europe and in the South countries, INTERTRYP conducts an integrated approach of the different actors of the trypanosomatidae cycle (human and animal host/parasite/vector/symbiont bacteria/ environment/climate) and their interactions in order to diagnose, analyze, develop and make available methods of control and elimination of these diseases to partners in the South and neglected populations.
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mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Jan 23, 2024
Manzanilla, Vincent; Barnabé, Christian; Guilhem, Sempéré; Millan, Joel Moo; Waleckx, Etienne, 2024, "mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms", https://doi.org/10.23708/W3TODJ, DataSuds, V2
Test data for the mbctools wrapper. Context and description: Chagas disease (CD) is a zoonotic parasitic disease caused by Trypanosoma cruzi, mainly transmitted to mammals through feces and urine of triatomines known as kissing bugs (Hemiptera: Reduviidae). Triatoma dimidiata is...
fastq_R1.tar.gz
Jan 23, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 558.2 MB - MD5: 181f80b886dcfba37b26daf41be1d4b6
R1 reads, meant to sit in the same folder as R2 reads
fastq_R2.tar.gz
Jan 23, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 876.3 MB - MD5: eee9a1bc22a95da1d5d17e1fe31cec0d
R2 reads, meant to sit in the same folder as R1 reads
fastqR1.txt.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 198 B - MD5: 4959f0abd40eb85b45eabb71f2e012e8
List of the R1 input files
fastqR2.txt.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 198 B - MD5: df31cc04aad844f751651aa799ae4d1a
List of the R2 input files
lociPE.txt.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 65 B - MD5: c4a3732bb2a2d6f58d2663c0de008fdf
List of the Paired End markers used in the mbctools test data.
lociSE.txt.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 36 B - MD5: ff2f4f4315938b6e38adfc618209174a
List of the Single End markers used in the mbctools test data.
metadata.csv.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 366 B - MD5: e4cd2e6385a6d52ab3251a45d8663e7d
Metadata associated with each samples of the test data (Sample, Capture date, Sampling, location, Developmental stage, Sex Species, Latitude, Longitude)
outputs.tar.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 22.2 KB - MD5: 156c6e3b9a823a4050537032aa3973da
Output of the mbctools pipeline. Log files and parameters used.
refs.tar.gz
Jan 11, 2024 - mbctools: A User-Friendly Metabarcoding and Cross-Platform Pipeline for Analyzing Multiple Amplicon Sequencing Data across a Large Diversity of Organisms
Gzip Archive - 6.1 KB - MD5: 519868512efc372dfdb5b26c82f9a49e
Reference sequences used to classify the given sequences into their respective markers.
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