Spatiotemporal survey of major rice diseases in western Burkina Faso

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Barro, Mariam; Tollenaere, Charlotte; Wonni, Issa; Kassankogno, Itolou Abalo; Sereme, Drissa, 2021, "Spatiotemporal survey of major rice diseases in western Burkina Faso", https://doi.org/10.23708/8FDWIE, DataSuds, V1, UNF:6:cOi1B77EUelpAGcUzEjhog== [fileUNF]

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Description	The study area is located in western Burkina Faso, in a 100x100kms region within the three provinces Houet, Kénédougou and Comoé, in the sudanian bioclimatic area. Major study sites correspond to three geographical zone (Bama, Banzon and Karfiguela), each of these zones presenting both an irrigated area and neighboring rainfed lowland. Irrigated areas and rainfed lowland were chosen as “neighboring” to assume similar climatic conditions. In this context, we assume that, for each zone, only the rice-growing practices change between irrigated areas and rainfed lowlands. We followed up these six sites from 2016 to 2019. Prior to that, an initial survey was performed in 2015 in two areas, all irrigated: Banzon and Karfiguela. We collected symptom data for the major rice diseases, especially yellow mottle disease, bacterial leaf streak, rice blast and brown spot. Also farmer's interviews were performed to characterize the agronomical practices in each studied site. For more details, refer to the main documentation file "Data_MP_Methodology.pdf" and to the project website https://pathobios.com/ (in french). (2020-07-07)
Subject	Agricultural Sciences; Earth and Environmental Sciences; Medicine, Health and Life Sciences
Keyword	Phytopathology, Rice diseases, Rice growing systems, Co-occurrence, Yellow mottle disease, Rice Yellow Mottle virus (RYMV), Bacterial Leaf Streak, Xanthomonas oryzae, Rice blast, Pyricularia oryzae, Brown spot, Bipolaris spp
Related Publication	Mariam Barro, Abalo Itolou Kassankogno, Issa Wonni, Drissa Sérémé, Irénée Somda, Hilaire Kouka Kaboré, Gilles Béna, Christophe Brugidou, Didier Tharreau, Charlotte Tollenaere. 2021. Spatiotemporal survey of multiple rice diseases in irrigated areas compared to rainfed lowlands in western Burkina Faso. Plant Disease
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	Data_MP_Cells_dataset.tab Data_MP/Tabular Data - 70.9 KB Published Apr 22, 2021 20 Downloads 18 Variables, 812 Observations UNF:6:eeazx7g+QQhwVay4sjvQNQ== Frequency of infected plants (%) in each cell for the following diseases: yellow mottle, Bacterial Leaf Blight, Bacterial Leaf Streak, rice blast, and brown spot ; one row for each grid cell observed on a particular year. DataSurvey	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Cells_data_dictionary.tab Data_MP/Tabular Data - 2.0 KB Published Apr 22, 2021 12 Downloads 2 Variables, 17 Observations UNF:6:+xtA4cv+JKL0bJWnfWZrZg== Frequency of infected plants in each cell: data dictionary Documentation	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Farmers_Interviews.tab Data_MP/Tabular Data - 49.9 KB Published Apr 22, 2021 10 Downloads 41 Variables, 165 Observations UNF:6:yTkXkGDi03WJVbUbJsOS5Q== Quantitative data collected from farmers interviews (in french) DataSurvey	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Farmers_Interviews_data_dictionary.tab Data_MP/Tabular Data - 3.5 KB Published Apr 22, 2021 9 Downloads 2 Variables, 41 Observations UNF:6:SdOc87OasNB3RvyMhVxN4g== Quantitative data collected from farmers interviews: data dictionary (in french) Documentation	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Field_Dates_dataset.tab Data_MP/Tabular Data - 6.0 KB Published Apr 22, 2021 11 Downloads 19 Variables, 59 Observations UNF:6:efE0lVn9+hnCRIOBrZKyuw== Time frame of the observations, sampling and interviews, one row per field. DataTime Series	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Field_Dates_data_dictionary.tab Data_MP/Tabular Data - 1.6 KB Published Apr 22, 2021 10 Downloads 2 Variables, 18 Observations UNF:6:8AeFucaiDZdw7EjcpgplEg== Time frame of the observations: data dictionary Documentation	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Field_Location_dataset.tab Data_MP/Tabular Data - 2.8 KB Published Apr 22, 2021 0 Downloads 6 Variables, 59 Observations UNF:6:qlmGxOdJ3s2z/R5dftbVkw== Precise locations of the studied rice fields (longitude and latitude), one row per field. Access to this file is restricted. DataGeospatial	Access File File Access Restricted Users may not request access to files. Download Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Field_Location_data_dictionary.tab Data_MP/Tabular Data - 457 B Published Apr 22, 2021 10 Downloads 2 Variables, 5 Observations UNF:6:/zvGxBnAeEkyrHgb5JXiGQ== Precise locations of the studied rice fields: data dictionary Documentation	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Methodology.pdf Data_MP/Adobe PDF - 1.0 MB Published Apr 22, 2021 30 Downloads MD5: 90e565b98e6d6d7be4434dfdcf4e52b4 Main documentation, in french and in english (10 pages, including figures and photos) Documentation	Access File File Access Public Download Options Adobe PDF Download Metadata Data File Citation EndNote XML RIS BibTeX
	Data_MP_Samples_dataset.tab Data_MP/Tabular Data - 567.4 KB Published Apr 22, 2021 15 Downloads 32 Variables, 4273 Observations UNF:6:5UH+qTP6Cy0IFb+8rvCbzQ== All data related to sampled plants and symptoms observed, one row for each maintained sample. DataSurvey	Access File File Access Public Download Options Comma Separated Values (Original File Format) Tab-Delimited RData Download Metadata Variable Metadata Data File Citation EndNote XML RIS BibTeX

Citation Metadata

Persistent Identifier	doi:10.23708/8FDWIE
Publication Date	2021-04-22
Title	Spatiotemporal survey of major rice diseases in western Burkina Faso
Author	Barro, Mariam (INERA - Burkina Faso; UMR PHIM - Univ.Montpellier, IRD, CIRAD, INRAE, Institut Agro - France) - ORCID: 0000-0002-3171-6496 Tollenaere, Charlotte (UMR PHIM - Univ.Montpellier, IRD, CIRAD, INRAE, Institut Agro - France) - ORCID: 0000-0003-2045-2824 Wonni, Issa (INERA - Burkina Faso) - ORCID: 0000-0003-1891-5447 Kassankogno, Itolou Abalo (INERA - Burkina Faso) - ORCID: 0000-0003-3168-1972 Sereme, Drissa (INERA - Burkina Faso) - ORCID: 0000-0002-2439-5735
Point of Contact	Use email button above to contact. Tollenaere, Charlotte (UMR PHIM - Univ.Montpellier, IRD, CIRAD, INRAE, Institut Agro - France)
Description	The study area is located in western Burkina Faso, in a 100x100kms region within the three provinces Houet, Kénédougou and Comoé, in the sudanian bioclimatic area. Major study sites correspond to three geographical zone (Bama, Banzon and Karfiguela), each of these zones presenting both an irrigated area and neighboring rainfed lowland. Irrigated areas and rainfed lowland were chosen as “neighboring” to assume similar climatic conditions. In this context, we assume that, for each zone, only the rice-growing practices change between irrigated areas and rainfed lowlands. We followed up these six sites from 2016 to 2019. Prior to that, an initial survey was performed in 2015 in two areas, all irrigated: Banzon and Karfiguela. We collected symptom data for the major rice diseases, especially yellow mottle disease, bacterial leaf streak, rice blast and brown spot. Also farmer's interviews were performed to characterize the agronomical practices in each studied site. For more details, refer to the main documentation file "Data_MP_Methodology.pdf" and to the project website https://pathobios.com/ (in french). (2020-07-07)
Subject	Agricultural Sciences; Earth and Environmental Sciences; Medicine, Health and Life Sciences
Keyword	Phytopathology Rice diseases Rice growing systems Co-occurrence Yellow mottle disease Rice Yellow Mottle virus (RYMV) Bacterial Leaf Streak Xanthomonas oryzae Rice blast Pyricularia oryzae Brown spot Bipolaris spp
Scientific Theme	Plant sciences (NumeriSud) https://uri.ird.fr/so/kos/tnu/076
Related Publication	Mariam Barro, Abalo Itolou Kassankogno, Issa Wonni, Drissa Sérémé, Irénée Somda, Hilaire Kouka Kaboré, Gilles Béna, Christophe Brugidou, Didier Tharreau, Charlotte Tollenaere. 2021. Spatiotemporal survey of multiple rice diseases in irrigated areas compared to rainfed lowlands in western Burkina Faso. Plant Disease Tollenaere C., S. Lacombe, I. Wonni, M. Barro, C. Ndougonna, F. Gnacko, D. Sérémé, S. Cunnac, C. Brugidou. 2017. Virus-bacteria rice co-infection in Africa: field estimation, reciprocal effects, molecular mechanisms, and evolutionary implications. Frontiers in Plant Science. 8:645 doi: 10.3389/fpls.2017.00645 https://www.frontiersin.org/articles/10.3389/fpls.2017.00645/full Bangratz M, Wonni I, Kini K, Sondo M, Brugidou C, Béna G, et al. (2020) Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso. PLoS ONE 15(4): e0232115 doi: 10.1371/journal.pone.0232115 https://journals.plos.org/plosone/article/authors?id=10.1371/journal.pone.0232115
Language	English
Producer	Institut de l'Environnement et Recherches Agricoles, Burkina Faso (INERA) http://www.cnrst.bf/index.php/inera/ Laboratoire Mixte International PathoBios: Observatoire des agents phytopathogènes en Afrique de l'Ouest, biodiversité et biosécurité (PathoBios) https://pathobios.com/
Funding Information	Labex Agro ANR-10-LABX-001-01: VIRBIARF 1403-041 Labex Agro ANR-10-LABX-001-01: E-Space Plant Epidemiosurveillance fp1501-004 Labex Agro ANR-10-LABX-001-01: RiPaBIOME 1702-011 CGIAR Research Program RICE
Depositor	Tollenaere, Charlotte
Deposit Date	2020-07-07
Time Period	Start Date: 2015-10-06 ; End Date: 2019-12-12
Date of Collection	Start Date: 2015-10-06 ; End Date: 2019-12-12
Data Type	Survey data; Observational data

Geospatial Metadata

Geographic Coverage	Burkina Faso Hauts Bassins / Cascades Burkina Faso Houet Burkina Faso Kénédougou Burkina Faso Comoé
Geographic Unit	field
Geographic Bounding Box	-5.234069628641009 -4.316711230203509 11.589289628615138 10.565591523902583

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