Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data

Version 1.1
Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data
Billard, Estelle; Thomas, Emilie; Perez, Manon; Boyer, Pascaline; Tollenaere, Charlotte, 2023, "Pathogenic diversity of rice yellow mottle virus isolates from western Burkina Faso (2015-2021): phenotypic evaluation data", https://doi.org/10.23708/MDQIUE, DataSuds, V1, UNF:6:s6z/ab1uEzE8BGyoZ906Dw== [fileUNF]
Learn about Data Citation Standards.
Dataset Metrics
52 Downloads
Description

The rice yellow mottle virus (RYMV) constitutes a major threat to the actual development of rice cultivation in Africa. As climate change and agricultural intensification increase the risk of epidemics, there is an urgent need to understand the spatio-temporal dynamics of RYMV at local scale.

This dataset provides information on the pathogenicity of RYMV isolates collected in western Burkina Faso between 2015 and 2021. Two experiments were conducted in controlled greenhouse conditions (IRD Montpellier, France, 2021-2022), to characterize the phenotype of viral isolates from the major viral genetic groups identified in western Burkina Faso, on a set of rice cultivars.

  • The first experiment aimed to assess the symptom severity and intra-plant viral accumulation of four viral isolates, each representing one identified genetic group, on three rice cultivars from western Burkina Faso and 2 reference cultivars. Three successive replications were performed.
  • The second experiment aimed to test the pathogenicity of 13 viral isolates (including those used in the first experiment), from the genetic groups identified in western Burkina Faso on one susceptible rice cultivar. The second experiment was all performed at the same time.

For both experiments, induced symptoms (estimated with a specific severity scale), as well as intra-plant viral accumulation (estimated though quantitative PCR), were evaluated for each viral isolate.

This experimental work evidenced no differences between the three rice cultivars cultivated in Burkina Faso, and no statistical effect of RYMV genetic group on symptom expression and viral load. We found however that RYMV isolates differed from each other and that the three isolates resulting in strongest symptoms and highest viral loads are from the same lineage (S1bzn).

For more details, refer to the main documentation file "Data_Experimental_Methodology.pdf". (2023-01-18)
Subject Agricultural Sciences; Medicine, Health and Life Sciences
Keyword Virology, Rice Yellow Mottle Virus (RYMV), Phenotypic evaluation, Plant symptoms, Viral load
Related Publication Billard E, Barro M, Sérémé D, Bangratz M, Wonni I, Koala M, Kassankogno AI, Hébrard E, Thébaud G, Brugidou C, Poulicard N, Tollenaere C. (2023) Dynamics of the rice yellow mottle disease in western Burkina Faso: Epidemic monitoring, spatio-temporal variation of viral diversity, and pathogenicity in a disease hotspot. Virus Evolution, 9(2). Oxford University Press (OUP). doi: 10.1093/ve/vead049
Notes Data type: Experimental data
License/Data Use Agreement

Custom Dataset Terms

Table
Tree
Filter by
1 to 5 of 5 Files
Data_Experimental_exp1.tab
Data_RYMV_BF/Tabular Data - 90.0 KB
Published Mar 24, 2023
9 Downloads
19 Variables, 1125 Observations UNF:6:HEgYv4Lt8b+jR6FvJu8iwg==
Phenotypic evaluation of 4 RYMV isolates on 5 rice cultivars. Notation of symptoms (symptom severity scale), intra-plant viral load (number of RYMV copies) and plant height measurements.
Data
Data_Experimental_exp1_dictionary.tab
Data_RYMV_BF/Tabular Data - 1.6 KB
Published Mar 24, 2023
8 Downloads
2 Variables, 18 Observations UNF:6:HJ9b5k2w16J5ne7PzDaBhA==
Phenotypic evaluation of 4 RYMV isolates on 5 rice cultivars: data dictionary.
Documentation
Data_Experimental_exp2.tab
Data_RYMV_BF/Tabular Data - 60.3 KB
Published Mar 24, 2023
12 Downloads
20 Variables, 560 Observations UNF:6:gBF2FdWDRDNua8FVXfgyRA==
Phenotypic evaluation of 13 RYMV isolates on one susceptible rice cultivar. Notation of symptoms (symptom severity scale), intra-plant viral load (number of RYMV copies) and plant height measurements.
Data
Data_Experimental_exp2_dictionary.tab
Data_RYMV_BF/Tabular Data - 1.7 KB
Published Mar 24, 2023
10 Downloads
2 Variables, 19 Observations UNF:6:+TzkOVPeIdsgY1RVAf+koQ==
Phenotypic evaluation of 13 RYMV isolates on one susceptible rice cultivar: data dictionary.
Documentation
Data_Experimental_Methodology.pdf
Data_Experimental_Methodology.pdf
Data_RYMV_BF/Adobe PDF - 516.6 KB
Published Mar 24, 2023
13 Downloads
MD5: 239896b27d9093ce38464e206d4b0901
Main documentation in English (4 pages, including figures, photos and references) "Methodology for phenotypic evaluation of RYMV isolates under controlled conditions"
Documentation
Edit File

This file has already been deleted (or replaced) in the current version. It may not be edited.

Restrict Access

Restricting limits access to published files. People who want to use the restricted files can request access by default. If you disable request access, you must add information about access to the Terms of Access field.

Learn about restricting files and dataset access in the User Guide.

Enable access request
You must enable request access or add terms of access to restrict file access.
Save Changes
Edit Embargo

The selected file or files have already been published. Contact an administrator to change the embargo date or reason of the file or files.
Delete Files

The file will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Select File(s)

Please select one or more files.

Share Dataset

Share this dataset on your favorite social media networks.

Dataset Citations

Citations for this dataset are retrieved from Crossref via DataCite using Make Data Count standards. For more information about dataset metrics, please refer to the User Guide.

Sorry, no citations were found.
Restricted Files Selected

The selected file(s) may not be downloaded because you have not been granted access.

Download Options

The files selected are too large to download as a ZIP.

You can select individual files that are below the 300.0 MB download limit from the files table, or use the Data Access API for programmatic access to the files.

Select File(s)

Please select a file or files to be downloaded.

Restricted Files Selected

The restricted file(s) selected may not be downloaded because you have not been granted access.

Click Continue to download the files you have access to download.

Delete Dataset

Are you sure you want to delete this dataset and all of its files? You cannot undelete this dataset.

Delete Draft Version

Are you sure you want to delete this draft version? Files will be reverted to the most recently published version. You cannot undelete this draft.

Unpublished Dataset Private URL

Private URL can only be used with unpublished versions of datasets.

Unpublished Dataset Private URL

Are you sure you want to disable the Private URL? If you have shared the Private URL with others they will no longer be able to use it to access your unpublished dataset.

Delete Files

The file(s) will be deleted after you click on the Delete button.

Files will not be removed from previously published versions of the dataset.

Compute

This dataset contains restricted files you may not compute on because you have not been granted access.

Deaccession Dataset

Are you sure you want to deaccession? The selected version(s) will no longer be viewable by the public.

Deaccession Dataset

Are you sure you want to deaccession this dataset? It will no longer be viewable by the public.

Version Differences Details

Please select two versions to view the differences.

Version Differences Details
 
Version:
Last Updated:
Version:
Last Updated:
Select File(s)

Please select a file or files for access request.

Select File(s)

Embargoed files cannot be accessed. Please select an unembargoed file or files for your access request.

Edit Tags

Select existing file tags or create new tags to describe your files. Each file can have more than one tag.

Request Access

  You need to Log In to request access.

Dataset Terms

This dataset is made available under the following terms. Please confirm and/or complete the information needed below in order to continue.

Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation shown on the dataset page.

Custom Dataset Terms — the following Custom Dataset Terms have been defined for this dataset.

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.
Licence Creative Commons
Ce(tte) œuvre est mise à disposition selon les termes de la Licence Creative Commons Attribution 4.0 International.
Preview Guestbook

Upon downloading files the guestbook asks for the following information.

Account Information

Package File Download

Use the Download URL in a Wget command or a download manager to download this package file. Download via web browser is not recommended. User Guide - Downloading a Dataverse Package via URL

https://dataverse.ird.fr/api/access/datafile/

Request Access

Please confirm and/or complete the information needed below in order to request access to files in this dataset.

Compute Batch
Clear Batch
Dataset Persistent Identifier Change Compute Batch
Compute Batch
Submit for Review

You will not be able to make changes to this dataset while it is in review.

Publish Dataset

Are you sure you want to republish this dataset?

Select if this is a minor or major version update.

Publish Dataset

This dataset cannot be published until LMI PathoBios is published by its administrator.

Publish Dataset

This dataset cannot be published until LMI PathoBios and DataSuds are published.

Return to Author

Return this dataset to contributor for modification.