Commensal small mammal trapping data in Southern Senegal, 2012-2015

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Commensal small mammal trapping data in Southern Senegal, 2012-2015
Granjon, Laurent; Fossati, Odile, 2020, "Commensal small mammal trapping data in Southern Senegal, 2012-2015", https://doi.org/10.23708/PQTQDA, DataSuds, V5, UNF:6:zoxxA3lfKeeu8etAwtMubQ== [fileUNF]
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Description
As part of projects aimed at studying 1) the role of invasive black rat populations in the emergence of zoonotic diseases in Southeastern Senegal, and 2), the evolutionary consequences of parasites in R. rattus and M. musculus invasions in Senegal, we conducted a series of field campaigns throughout the southern part of the country, between May 2012 and September 2015. The objective was to catch commensal (= indoor) small mammals using standard trapping procedures, identify them using morphological or, if needed, molecular tools, and take a number of samples from them upon autopsy, to look for zoonotic parasites and pathogens. Along with data on individual specimens, information on microhabitat were gathered at each trap position.

This resulted in the constitution of a dataset of more than 13.000 trapnights, which allowed the capture of 3166 small mammals, all characterized by a series of associated biological, geographical and environmental data. The small mammals concerned are mainly rodents (10 species), and a few species of shrews and hedgehogs. The two invasive rodent species (the domestic mouse Mus musculus domesticus and the black rat Rattus rattus) were the most numerous, exceeding in numbers all the other species pooled.

This dataset makes it possible to study coarse to fine-scaled distribution of species of this small mammal commensal community in the southern part of Senegal, as well as the possible determinants of this distribution in terms of habitat preferences and / or interspecific interactions. Combined with data obtained through the treatment of associated biological samples (population genetics, parasite loads, pathogen prevalence…) they make it possible to precise the epidemiological context surrounding zoonotic diseases in which these small mammal species act as reservoirs or vectors.
Subject Earth and Environmental Sciences; Medicine, Health and Life Sciences
Keyword Community ecology, Microhabitat description, Biological invasion, Rodents, West Africa
Related Publication Lucaccioni H., Granjon L., Dalecky A., Fossati O., Le Fur J., Duplantier J.M. & Handschumacher P. 2016. From human geography to biological invasions: the Black rat distribution in the changing Southeastern of Senegal. PLoS ONE 11 (9): e0163547 doi: 10.1371/journal.pone.0163547
Notes Data type: Observational data; Survey data
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Commensal_small_mammals_southern_Senegal_2012-2015_Data-V3.tab
Small_mammals_Senegal/Tabular Data - 2.1 MB
Published Apr 7, 2021
37 Downloads
24 Variables, 13263 Observations UNF:6:ZO7galDm4UXrKyKaFKZe3A==
Results of small mammal trapping in commensal habitat, southern Senegal 2012-2015
DataSurvey
Commensal_small_mammals_southern_Senegal_2012-2015_README.txt
Small_mammals_Senegal/Plain Text - 3.3 KB
Published Oct 4, 2023
9 Downloads
MD5: b76fb5d5361eb1caa8006c04c17a8a51
Dataset citation, description and terms of use
Documentation
Commensal_small_mammals_southern_Senegal_2012_2015_var_info.tab
Small_mammals_Senegal/Tabular Data - 4.5 KB
Published Dec 18, 2020
32 Downloads
12 Variables, 53 Observations UNF:6:NCX3W802kKNTadIst8pbIA==
Detailed description of the variables (data and code dictionary)
Documentation
Granjon_et_al_Fig1.jpeg
Granjon_et_al_Fig1.jpeg
Small_mammals_Senegal/JPEG Image - 740.4 KB
Published Nov 17, 2023
6 Downloads
MD5: 54d6e33a4d2f41a849afc1f0e7c9aa63
Figure: Relative frequencies of the small mammals caught in each of the 49 localities sampled. 1: Bakel, 2: Badi Nieriko, 3: Bala, 4: Bantako, 5: Birkelane, 6: Boutougoufara, 7: Bransan, 8: Dembankane, 9: Diakene-Wolof, 10: Dianke Makha, 11: Diattacounda, 12: Diawara, 13: Dide Gassama, 14: Dieylany, 15: Doulouyabe, 16: Fadiouth, 17: Gandiaye, 18: Goudiry, 19: Gouloumbou, 20: Goumbayel, 21: Ida Seco, 22: Joal, 23: Kedougou, 24: Kidira, 25: Kothiary, 26: Kounkane, 27: Koussan, 28: Mako, 29: Marsassoum, 30: Mereto, 31: Ndiobene, 32: Niahene, 33: Panal, 34: Rufisque, 35: Sabodala, 36: Segou, 37: Seme, 38: Sil, 39: Sinthian Koundara, 40: Sinthiou Doube, 41: Sinthiou Maleme, 42: Soutouta, 43: Tambacounda, 44: Talibadji, 45: Tobor, 46: Tuabou, 47: Velingara, 48: Yafera, 49: Youppe Hamady (see Table 1 for geographic coordinates and home area of each locality). Modified from Fig. 5 in Granjon et al. (2021). Country map retrieved from GADM 3.6 https://gadm.org/index.html) and roads from OpenStreetMap (http://download.geofabrik.de/africa/senegal-and-gambia-latest-free.shp.zip). NR1, NR6 and NR7: National Roads 1, 6 and 7.
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