Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Version 1.0
Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, Francois; Cunnac, Sébastien, 2022, "Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/RJDLCN, DataSuds, V1
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Description
Related to CulebrONT software, this dataset includes:
- data used to test the software
- 2 reports generated by the software : from the test data and from other data
- supplementary technical information about CulebrONT pipeline (2022-08-17)
Subject Computer and Information Science
Keyword assembly, quality control, long reads, FAIR, reproducibility, snakemake pipeline, python package, genome
Related Publication Orjuela, J. et al. (2022) « Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes ». DataSuds. doi:10.23708/TBPNWJ.
doi: 10.23708/tbpnwj
Notes CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly.
Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/
Code development: https://github.com/SouthGreenPlatform/culebrONT

The authors acknowledge the IRD i-Trop HPC (South Green Platform) from IRD Montpellier for providing resources that contributed to this work.
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CulebrONT_Data-Xoo-sub.zip
CulebrONT_supplemental/ZIP Archive - 314.2 MB
Published Aug 18, 2022
7 Downloads
MD5: c1d4d4fb38546ad3e07c34c25203ab73
Dataset used to test CulebrONT code
Data
CulebrONT_PCJ_supplemental.pdf
CulebrONT_PCJ_supplemental.pdf
CulebrONT_supplemental/Adobe PDF - 1.1 MB
Published Aug 18, 2022
11 Downloads
MD5: 491db3bc9c1d44f16d9eb0a4ce2f4c43
Supplementary information related to CulebrONT pipeline implementation
Documentation
Preview "CulebrONT_supplemental/CulebrONT_PCJ_supplemental.pdf"
CulebrONT_REPORTS.zip
CulebrONT_supplemental/ZIP Archive - 813.6 MB
Published Aug 18, 2022
7 Downloads
MD5: 595aa262a2ffcd91fb88d785cd3fa4dc
Reports generated by the CulebrONT software with data from different organisms (rice, nematoda, bacteria) as described in the PCJ manuscript
DataDocumentation
CulebrONT_REPORT_Data-Xoo-sub.zip
CulebrONT_supplemental/ZIP Archive - 27.0 MB
Published Aug 18, 2022
6 Downloads
MD5: 063d9231f2ccd8e571191ab2c2ef503d
Final report generated by CulebrONT software using the test dataset Data-Xoo-sub.zip
DataDocumentation
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