DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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Simulated data for GranPa v1 paper
Aug 26, 2026 - GraNPA Simulated data
Carrette, Camille, 2026, "Simulated data for GranPa v1 paper", https://doi.org/10.23708/PGUHS8, DataSuds, V1
This dataset contains all the simulated data (insertion, deletion, original sequences) and graphs for the GranPa v1 paper
rice data
rice data
Aug 26, 2026 - GraNPA true data
Carrette, Camille; Muller, Cédric, 2026, "rice data", https://doi.org/10.23708/M2U8UV, DataSuds, V2, UNF:6:lyR0AOqrO7l0IQSern+OYg== [fileUNF]
This dataset cointains all the output from GraNPA original paper for rice
GraNPA Simulated data(IRD - Institut de Recherche pour le Développement)
Jul 31, 2026GranPA
cattle data
Jul 31, 2026 - GraNPA true data
Carrette, Camille, 2026, "cattle data", https://doi.org/10.23708/2G2DFB, DataSuds, V1
Cattle Pangenome variation graph data used in the GranPA paper
GraNPA true data(IRD - Institut de Recherche pour le Développement)
Jul 31, 2026GranPA
Supplementary command lines for the GraNPA paper
Jul 30, 2026 - GraNPA other codes used for the manuscript
Carrette, Camille; Muller, Cédric, 2026, "Supplementary command lines for the GraNPA paper", https://doi.org/10.23708/AU5ALD, DataSuds, V1
This file contains all the commands used for generate data and results in the GranPA paper
GraNPA other codes used for the manuscript(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026GranPA
GranPa source code, v1
GranPa source code, v1
Jul 30, 2026 - GranPa Source Code
Carrette, Camille; Muller, Cédric, 2026, "GranPa source code, v1", https://doi.org/10.23708/JG96WP, DataSuds, V1
This code is the version used in the GranPa paper
GranPa Source Code(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026GranPA
GranPA(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026PANEEC Team
This dataverse contains the data, codes and command lines used for the GranPA v1 article
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