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UMR DIADE (IRD, University of Montpellier, Cirad, CNRS)

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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1 to 8 of 8 Results
Feb 1, 2021 - Equipe EVOGEC
Guyot, Romain; Orozco-Arias, Simon; Isaza, Gustavo, 2021, "Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning", https://doi.org/10.23708/QCMOUA, DataSuds, V2
Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) fo...
Sep 18, 2020 - Equipe CERES
Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF]
RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...
Sep 2, 2020 - Equipe CERES
Grondin, Alexandre; Affortit, Pablo; Tranchant-Dubreuil, Christine; De La Fuente Canto, Carla; Mariac, Cedric; Gantet, Pascal; Vadez, Vincent; Vigouroux, Yves; Laplaze, Laurent, 2020, "Aquaporins in Pearl Millet: genomic, coding and protein sequences", https://doi.org/10.23708/WVCG5O, DataSuds, V1
Pearl millet (Pennisetum glaucum (L) R. Br.) is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress. Physiological mechanisms consisting in saving water or increasing water use efficiency can alleviate that stress....
AgroLD(SouthGreen Bioinformatics Platform, IRD, CIRAD)
AgroLD logo
Mar 16, 2020
Agronomic Linked Data The RDF Knowledge-based Database for plant molecular networks
Mar 10, 2020 - Equipe EVOGEC
Guyot, Romain; Hamon, Perla; Couturon, Emmanuel; Raharimalala, Nathalie; Rakotomalala, Jean-Jacques, 2020, "Photo bank for: WCSdb: A database of Wild Coffea Species", https://doi.org/10.23708/JZA8I2, DataSuds, V1, UNF:6:D4jmlyKfcJyf9HHyxzxguQ== [fileUNF]
Coffee is a beverage enjoyed by millions of people worldwide and an important commodity for millions of people. Beside the two cultivated species (Coffea arabica and Coffea canephora), the 139 wild coffee species belong to the Coffea genus are largely unknown to coffee scientists...
Mar 9, 2020 - Equipe EVOGEC
Guyot, Romain; Charr, Jean-Claude; Garavito, Andrea; Guyeux, Christophe; Crouzillat, Dominique; Descombes, Patrick; Ly, Serigne; Raharimalala, Eva; Rakotomalala, Jean-Jacques; Stoffelen, Piet; Janssen, Steven; Hamon,Perla, 2020, "Replication Data for: Complex evolutionary history of coffees including Coffea canephora (Robusta coffee) revealed by full plastid genomes and 28,800 nuclear SNPs analyses", https://doi.org/10.23708/KWRIJJ, DataSuds, V1
The dataset concerns all chloroplast complete sequences for Coffea genus. Sequences were annotated with the Genbank format (*.gb).
Equipe EVOGEC logo
Feb 6, 2020
EVOGEC team : Evolution of Coffee trees Genomes
Equipe CERES logo
Nov 15, 2019
CERES team : CEreal Roots Systems
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