UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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1 to 10 of 48 Results

Main data for DateBack May 6, 2025 - DateBack Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Main data for DateBack", https://doi.org/10.23708/4ZHYZU, DataSuds, V4 Appendix 1 of Dateback data. It provides the position, origin, and so on of each data on DateBack. An associated metatable provides also information on each type of fields
Radiocarbon data table for date palm remains for <i><b>Date Back</i></b> May 6, 2025 - DateBack Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Date Back", https://doi.org/10.23708/C5N9CM, DataSuds, V2 This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...
GrAnnoT source code and scripts Mar 20, 2025 - GrAnnoT Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2 GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main
Output from the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.
Data used for the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
GrAnnoT data and output(IRD - Institut de Recherche pour le Développement) Feb 26, 2025GrAnnoT This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...
GrAnnoT(IRD - Institut de Recherche pour le Développement) Feb 26, 2025PANEEC Team
Source code for DateBack Feb 24, 2025 - DateBack Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2 Source code for the DatePalm website https://XXXXXXX
DateBack(IRD - Institut de Recherche pour le Développement) Feb 20, 2025DYNADIV Team
PANEEC Team(IRD - Institut de Recherche pour le Développement) Feb 20, 2025

Main data for DateBack

May 6, 2025 - DateBack

Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Main data for DateBack", https://doi.org/10.23708/4ZHYZU, DataSuds, V4

Appendix 1 of Dateback data. It provides the position, origin, and so on of each data on DateBack. An associated metatable provides also information on each type of fields

Radiocarbon data table for date palm remains for <i><b>Date Back</i></b>

May 6, 2025 - DateBack

Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Date Back", https://doi.org/10.23708/C5N9CM, DataSuds, V2

This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...

GrAnnoT source code and scripts

Mar 20, 2025 - GrAnnoT

Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2

GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main

Output from the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.

Data used for the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

GrAnnoT data and output(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025GrAnnoT

This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...

GrAnnoT(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025PANEEC Team

Source code for DateBack

Feb 24, 2025 - DateBack

Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2

Source code for the DatePalm website https://XXXXXXX

DateBack(IRD - Institut de Recherche pour le Développement)

Feb 20, 2025DYNADIV Team

PANEEC Team(IRD - Institut de Recherche pour le Développement)

Feb 20, 2025

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