UMR DIADE

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.

CERES Team

DYNADIV Team

PANEEC Team

EVOGEC Team

ADvENS Team

AgroLD

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1 to 10 of 50 Results

VCF files from the study of low recombining genomic regions in pearl millet Jun 23, 2025 - DYNADIV Team Salson, Marine; Duranton, Maud; Huynh, Stella; Mariac, Cédric; Tranchant-Dubreuil, Christine; Orjuela, Julie; Cubry,Philippe; Thuillet, Anne-Celine; Burgarella, Concetta; De Navascués, Miguel; Zekraouï, Leïla; Couderc, Marie; Arribat, Sandrine; Rodde, Nathalie; Barnaud, Adeline; Adama Faye; Kane, Ndjido; Vigouroux, Yves; Berthouly-Salazar, Cécile, 2025, "VCF files from the study of low recombining genomic regions in pearl millet", https://doi.org/10.23708/SN2T4A, DataSuds, V1 We conducted a comprehensive investigation of large low-recombining regions in cultivated populations of pearl millet, an outcrossing diploid African cereal. We adopted a population genomic approach based on the analysis of single nucleotide polymorphisms. The repository contains...
Taxonomy of the native angiosperm flora of New Caledonia in 1911, 1948, 2001, 2012 and 2024 Jun 20, 2025 - DYNADIV Team Gotty, Karine; Pillon, Yohan, 2025, "Taxonomy of the native angiosperm flora of New Caledonia in 1911, 1948, 2001, 2012 and 2024", https://doi.org/10.23708/TLRYUM, DataSuds, V1, UNF:6:uST0iWeHOy7tvpNpRUnNdw== [fileUNF] The table lists all angiosperm species from New Caledonia cited in five successive checklists published in 1911, 1948, 2001, 2012 and 2024. The table track the fate of each species in the five checklissts and in particular the changes in genus and family.
Main data for DateBack May 6, 2025 - DateBack Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Main data for DateBack", https://doi.org/10.23708/4ZHYZU, DataSuds, V4 Appendix 1 of Dateback data. It provides the position, origin, and so on of each data on DateBack. An associated metatable provides also information on each type of fields
Radiocarbon data table for date palm remains for <i><b>Date Back</i></b> May 6, 2025 - DateBack Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Date Back", https://doi.org/10.23708/C5N9CM, DataSuds, V2 This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...
GrAnnoT source code and scripts Mar 20, 2025 - GrAnnoT Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2 GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main
Output from the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.
Data used for the analysis described in GrAnnoT paper Mar 20, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
GrAnnoT data and output(IRD - Institut de Recherche pour le Développement) Feb 26, 2025GrAnnoT This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...
GrAnnoT(IRD - Institut de Recherche pour le Développement) Feb 26, 2025PANEEC Team
Source code for DateBack Feb 24, 2025 - DateBack Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2 Source code for the DatePalm website https://XXXXXXX

VCF files from the study of low recombining genomic regions in pearl millet

Jun 23, 2025 - DYNADIV Team

Salson, Marine; Duranton, Maud; Huynh, Stella; Mariac, Cédric; Tranchant-Dubreuil, Christine; Orjuela, Julie; Cubry,Philippe; Thuillet, Anne-Celine; Burgarella, Concetta; De Navascués, Miguel; Zekraouï, Leïla; Couderc, Marie; Arribat, Sandrine; Rodde, Nathalie; Barnaud, Adeline; Adama Faye; Kane, Ndjido; Vigouroux, Yves; Berthouly-Salazar, Cécile, 2025, "VCF files from the study of low recombining genomic regions in pearl millet", https://doi.org/10.23708/SN2T4A, DataSuds, V1

We conducted a comprehensive investigation of large low-recombining regions in cultivated populations of pearl millet, an outcrossing diploid African cereal. We adopted a population genomic approach based on the analysis of single nucleotide polymorphisms. The repository contains...

Taxonomy of the native angiosperm flora of New Caledonia in 1911, 1948, 2001, 2012 and 2024

Jun 20, 2025 - DYNADIV Team

Gotty, Karine; Pillon, Yohan, 2025, "Taxonomy of the native angiosperm flora of New Caledonia in 1911, 1948, 2001, 2012 and 2024", https://doi.org/10.23708/TLRYUM, DataSuds, V1, UNF:6:uST0iWeHOy7tvpNpRUnNdw== [fileUNF]

The table lists all angiosperm species from New Caledonia cited in five successive checklists published in 1911, 1948, 2001, 2012 and 2024. The table track the fate of each species in the five checklissts and in particular the changes in genus and family.

Main data for DateBack

May 6, 2025 - DateBack

Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Main data for DateBack", https://doi.org/10.23708/4ZHYZU, DataSuds, V4

Appendix 1 of Dateback data. It provides the position, origin, and so on of each data on DateBack. An associated metatable provides also information on each type of fields

Radiocarbon data table for date palm remains for <i><b>Date Back</i></b>

May 6, 2025 - DateBack

Besseiche, Margot; Gros-Balthazard, Muriel; Chambraud, Elora Thanh; Dabrowski, Vladimir; Brandstätt, Elisa; Bouchaud, Charlène, 2025, "Radiocarbon data table for date palm remains for Date Back", https://doi.org/10.23708/C5N9CM, DataSuds, V2

This table documents radiocarbon analyses of date palm remains from Date Back, linking each analysis to its site and context from the Main Table. It includes specific fields such as laboratory codes, anatomical parts, preservation states, raw 14C ages (with uncertainty), and cali...

GrAnnoT source code and scripts

Mar 20, 2025 - GrAnnoT

Sabot, Francois; Marthe, Nina; Zytnicki, Matthias, 2025, "GrAnnoT source code and scripts", https://doi.org/10.23708/TW3KYV, DataSuds, V2

GrAnnoT is an annotation transfer tool for pangenome graph. The source code at the time of the paper submission is available in this dataset. The git repository is available at : https://forge.ird.fr/diade/dynadiv/grannot/-/tree/main

Output from the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Output from the analysis described in GrAnnoT paper", https://doi.org/10.23708/RRSKRA, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the outputs from these tests are available in this dataset. It includes mainly transferred annotations.

Data used for the analysis described in GrAnnoT paper

Mar 20, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V5

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

GrAnnoT data and output(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025GrAnnoT

This folder contains the data necessary for the analysis described in GrAnnoT's paper (doi), and the files produced with this data. The command lines used to process this data and produce the outputs are described in the file "grannot_analysis_command_lines.txt". The only unprovi...

GrAnnoT(IRD - Institut de Recherche pour le Développement)

Feb 26, 2025PANEEC Team

Source code for DateBack

Feb 24, 2025 - DateBack

Besseiche, Margot; Sabot, Francois; Gros-Balthazard, Muriel, 2025, "Source code for DateBack", https://doi.org/10.23708/KNQIN1, DataSuds, V2

Source code for the DatePalm website https://XXXXXXX

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