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UMR DIADE (IRD, University of Montpellier, Cirad)

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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1 to 10 of 29 Results
Dec 6, 2023 - DYNADIV Team
Diop, Baye Magatte; Barnaud, Adeline; Billot, Claire; Guèye, Mame Codou, 2023, "Supplementary data for: Ethnolinguistic and genetic diversity of fonio (Digitaria exilis - Kippist - Stapf) in Senegal", https://doi.org/10.23708/5WDKS1, DataSuds, V1, UNF:6:NeauNrptcRyq6NeGtIhJqg== [fileUNF]
This data on fonio highlighted that social factors are pivotal in structuring diversity and should be taken into greater consideration in research and conservation projects to dovetail local and regional scales. It also showed that neglected species such as fonio - which are seld...
Nov 29, 2023 - DYNADIV Team
Millet, Claude Patrick; Allinne, Clémentine; Vi, Tram; Marraccini, Pierre; Verleysen, Lauren; Couderc, Marie; Ruttink, Tom; Zhang, Dapeng; Solano Sánchez, William; Christine, Tranchant-Dubreuil; Jeune, Wesly; Poncet, Valérie, 2023, "Genotyping data for field samples from Haitian coffee agroforestry systems and international collection accessions", https://doi.org/10.23708/T6YZML, DataSuds, V1, UNF:6:4wzzOYlt0nsxd5jgI0e5Eg== [fileUNF]
Though facing significant challenges, Coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide several ecosystem services. There has been little work done on their genetic diversity and the variety mixtures used, an...
Oct 10, 2023 - TrEMOLO software - Data and codes
MOHAMED, Mourdas, 2023, "2.3-beta1 version of TrEMOLO", https://doi.org/10.23708/IEL4HY, DataSuds, V1
New version of TrEMOLO
Sep 27, 2023 - DYNADIV Team
Kaczmarek, Thomas; Van der Veen, Marijke; Ivorra, Sarah; Mattingly, David; Terral, Jean-Frederic; Gros-Balthazard, Muriel, 2023, "Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds", https://doi.org/10.23708/D3WASI, DataSuds, V1, UNF:6:Z02ean4vSayKRRTZjiasPw== [fileUNF]
The development of oasis agriculture is a turning point for humans in North Africa and West Asia. The date palm (Phoenix dactylifera L.), is one of the most critical species in these agroecosystems. It was domesticated in the Gulf region over 6,000 years ago and later spread to o...
Jul 12, 2023 - DYNADIV Team
Kaczmarek, Thomas; Causse, Sandrine; Abdul, Suleiman Dangana; Abraham, Solomon; Achigan-Dako, Enoch G.; Adje, Charlotte; Adjebeng-Danquah, Joseph; Agyare, Richard Y.; Akanvou, Louise; Bakasso, Yacoubou; Barry, Mamadou B.; Bonsu, Samuel K.; Calatayud, Caroline; Conde, Soukeye; Couderc, Marie; Dachi, Stephen N.; Diallo, T; Diop, Baye M.; Deu, Monique; Gueye, Mame C.; Ibrahim Bio Yerima, Abdou R.; Issah, Abdul R; Kane, Ndjido Ardo; Kombiok, James M.; Ngom, Ablaye; Noyer, Jean-Louis; Olodo, Katina; Oselebe, Happiness O.; Pham, Jean-Louis; Picquet, Marie; Puozaa, Doris K.; Rivallan, Ronan; Saidou, Sani; Sekloka, Emmanuel; Tengey, Theophilus K.; Uyoh, Edak; Vancoppenolle, Sylvie; Vigouroux, Yves; Zekraoui, Leila; Leclerc, Christian; Barnaud, Adeline; Billot, Claire, 2023, "Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data", https://doi.org/10.23708/TX5DE2, DataSuds, V1, UNF:6:3fJ9FCQhz8EPtGubWUVcZA== [fileUNF]
Neglected and under-utilized species represent important genetic resources and untapped reservoirs of diversity to address global food and nutrition challenges. Characterizing the extent of their genetic diversity and making it available is of prime importance to their wider use...
May 24, 2023 - DYNADIV Team
Silva, Alexander; Montoya, María Elker; Quintero, Constanza; Cuasquer, Juan; Tohme, Joe; Graterol, Eduardo; Cruz, Maribel; Lorieux, Mathias, 2023, "Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis", https://doi.org/10.23708/EERVFW, DataSuds, V1, UNF:6:0DU/A3JpDpAzWfzkjq7pXA== [fileUNF]
These data can be used to search for quantitative trait loci (QTLs) for resistance to the Rice hoja blanca disease: - Genotypic matrices of single nucleotide polymorphism (SNP) data in four independent F2, F3 segregating populations of rice (Oryza sativa L.) derived from resistan...
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "Caiapo genome", https://doi.org/10.23708/QMM2WH, DataSuds, V1
This data are the draft genome assembly of Caiapo and its annotation transferred from IRGSP1.0/Nipponbare reference genome. Caiapo is a Oryza sativa variety involved in some CSSL crosses (2023-04-21)
Apr 21, 2023 - OryzaGenomeData
SABOT, Francois, 2023, "MG12 data", https://doi.org/10.23708/1JST4X, DataSuds, V1
This data are the draft genome assembly of MG12 ans its annotation transfered from IRGSP1.0/Nipponbare ference genome. MG12 is a Oryza glaberrima variety involved in some CSSL crosses
OryzaGenomeData(IRD - Institut de Recherche pour le Développement)
Apr 21, 2023
Jan 27, 2023 - DYNADIV Team
Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data and code for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V3, UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== [fileUNF]
We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14...
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