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UMR DIADE (IRD, University of Montpellier, Cirad)

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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1 to 10 of 11 Results
Jun 24, 2022
Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François; Cunnac, Sébastien, 2022, "Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes",, DataSuds, V2
CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: Code development: h...
DYNADIV Team logo
Jun 9, 2022
The main focus of DYNADIV Team is tounderstand how biodiversity of tropical plants is shaped through evolutionary forces resulting from human and environmental impacts. Its activity is essentially based on population genetics but also integrates a multidisciplinary approach inclu...
Oct 4, 2021 - CERES Team
Vadez, Vincent; Bossuet, Jérome, 2021, "France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions",, DataSuds, V2
The CGIAR is undertaking a global reform, oneCGIAR, to deploy faster, at larger scale agricultural innovations for a more inclusive and systemic transformation of smallholder agriculture in the developing countries. France supports this reform and IRD is fully engaged with CGIAR...
Feb 1, 2021 - EVOGEC Team
Guyot, Romain; Orozco-Arias, Simon; Isaza, Gustavo, 2021, "Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning",, DataSuds, V2
Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) fo...
Sep 18, 2020 - CERES Team
Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2",, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF]
RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...
Sep 2, 2020 - CERES Team
Grondin, Alexandre; Affortit, Pablo; Tranchant-Dubreuil, Christine; De La Fuente Canto, Carla; Mariac, Cedric; Gantet, Pascal; Vadez, Vincent; Vigouroux, Yves; Laplaze, Laurent, 2020, "Aquaporins in Pearl Millet: genomic, coding and protein sequences",, DataSuds, V1
Pearl millet (Pennisetum glaucum (L) R. Br.) is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress. Physiological mechanisms consisting in saving water or increasing water use efficiency can alleviate that stress....
AgroLD(SouthGreen Bioinformatics Platform, IRD, CIRAD)
AgroLD logo
Mar 16, 2020
Agronomic Linked Data The RDF Knowledge-based Database for plant molecular networks
Mar 10, 2020 - EVOGEC Team
Guyot, Romain; Hamon, Perla; Couturon, Emmanuel; Raharimalala, Nathalie; Rakotomalala, Jean-Jacques, 2020, "Photo bank for: WCSdb: A database of Wild Coffea Species",, DataSuds, V1, UNF:6:D4jmlyKfcJyf9HHyxzxguQ== [fileUNF]
Coffee is a beverage enjoyed by millions of people worldwide and an important commodity for millions of people. Beside the two cultivated species (Coffea arabica and Coffea canephora), the 139 wild coffee species belong to the Coffea genus are largely unknown to coffee scientists...
Mar 9, 2020 - EVOGEC Team
Guyot, Romain; Charr, Jean-Claude; Garavito, Andrea; Guyeux, Christophe; Crouzillat, Dominique; Descombes, Patrick; Ly, Serigne; Raharimalala, Eva; Rakotomalala, Jean-Jacques; Stoffelen, Piet; Janssen, Steven; Hamon,Perla, 2020, "Replication Data for: Complex evolutionary history of coffees including Coffea canephora (Robusta coffee) revealed by full plastid genomes and 28,800 nuclear SNPs analyses",, DataSuds, V1
The dataset concerns all chloroplast complete sequences for Coffea genus. Sequences were annotated with the Genbank format (*.gb).
EVOGEC Team logo
Feb 6, 2020
EVOGEC Team: Evolution of Coffee trees Genomes
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