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UMR DIADE (IRD, University of Montpellier, Cirad)

DIversity - Adaptation - plant DEvelopment

The DIADE Research Unit aims to understand the diversification of tropical plants, one of the main original reservoirs of biodiversity, and for which conservation, management and exploitation are an important issue for Sustainable Development.

The nine teams forming the Unit belong to IRD, University of Montpellier, CIRAD, and CNRS.
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1 to 10 of 15 Results
Sep 22, 2022 - ADvENS Team
Amimi, Nabil; Ghouil, Hana; Zitouna-Chebbi, Rim; Joët, Thierry; Ammari, Youssef, 2022, "Replication Data for Distribution of Quercus ilex subsp. rotundifolia in Tunisia and intraspecific variation of seed morphophysiological traits along climatic gradients", https://doi.org/10.23708/TYFN5U, DataSuds, V1, UNF:6:cHGNf+36WqEUqJV2nD6V3w== [fileUNF]
This dataset gathers geographical information for the distribution sites of Quercus ilex subsp. rotundifolia in Tunisia in 2020, as well as climatic data and seed morpho-physiological traits associated with the 18 main populations identified. In order to identify adaptations to l...
ADvENS Team(UMR DIADE)
ADvENS Team logo
Sep 9, 2022
ADvENS Team The ADvENS team performs integrative analyses of the diversity and environmental adaptation of tropical and Mediterranean trees. In particular, the team aims to better understand the evolution of genomes, transcriptomes and metabolisms associated with local adaptation...
Aug 18, 2022
Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François; Cunnac, Sébastien, 2022, "Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/TBPNWJ, DataSuds, V3
CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly. Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/ Code development: h...
Aug 18, 2022
Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, Francois; Cunnac, Sébastien, 2022, "Test data, reports and documentation for CulebrONT software: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/RJDLCN, DataSuds, V1
Related to CulebrONT software, this dataset includes: - data used to test the software - 2 reports generated by the software : from the test data and from other data - supplementary technical information about CulebrONT pipeline
Jul 1, 2022 - DYNADIV Team
Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V1
We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14...
DYNADIV Team(UMR DIADE)
DYNADIV Team logo
Jun 9, 2022
The main focus of DYNADIV Team is tounderstand how biodiversity of tropical plants is shaped through evolutionary forces resulting from human and environmental impacts. Its activity is essentially based on population genetics but also integrates a multidisciplinary approach inclu...
Oct 4, 2021 - CERES Team
Vadez, Vincent; Bossuet, Jérome, 2021, "France-CGIAR BRIDGE collaboration: integrated model-based approaches for climate and water smart decisions", https://doi.org/10.23708/IY0MZY, DataSuds, V2
The CGIAR is undertaking a global reform, oneCGIAR, to deploy faster, at larger scale agricultural innovations for a more inclusive and systemic transformation of smallholder agriculture in the developing countries. France supports this reform and IRD is fully engaged with CGIAR...
Feb 1, 2021 - EVOGEC Team
Guyot, Romain; Orozco-Arias, Simon; Isaza, Gustavo, 2021, "Fasta files for InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning", https://doi.org/10.23708/QCMOUA, DataSuds, V2
Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes belonging to 108 plant species, classified down to the lineage level. This dataset has been used to train two deep neural networks (one fully connected and one convolutional) fo...
Sep 18, 2020 - CERES Team
Faye, Awa; Chopart, Jean-Louis; Sine, Bassirou; Grondin, Alexandre; Laplaze, Laurent, 2019, "Racine 2.2", https://doi.org/10.23708/CKRDBW, DataSuds, V2, UNF:6:fVTiCa1QVm8CD3Jna7gAdg== [fileUNF]
RACINE2.2 est une application de traitement de données racinaires fondée sur des comptages, sur le terrain, d’impacts de racine au travers d’une grille placée sur un profil de sol. Cette méthode permet de mesurer les intersections entre un plan représenté par ce profil de sol et...
Sep 2, 2020 - CERES Team
Grondin, Alexandre; Affortit, Pablo; Tranchant-Dubreuil, Christine; De La Fuente Canto, Carla; Mariac, Cedric; Gantet, Pascal; Vadez, Vincent; Vigouroux, Yves; Laplaze, Laurent, 2020, "Aquaporins in Pearl Millet: genomic, coding and protein sequences", https://doi.org/10.23708/WVCG5O, DataSuds, V1
Pearl millet (Pennisetum glaucum (L) R. Br.) is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress. Physiological mechanisms consisting in saving water or increasing water use efficiency can alleviate that stress....
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