1 to 10 of 11 Results
Adji, Beda-Innocent; Chakocha Ngandjui, Armel Franklin; Guibien Cléophas Zerbo; Marie Louise Avana Tientcheu; Hardy, Olivier; Mariac, Cédric; Duminil, Jérôme, 2024, "Data on the Genetic Diversity Study of the African Olive (Canarium schweinfurthii, Burseraceae) in Africa for Climate Change Adaptation", https://doi.org/10.23708/GWRGBC, DataSuds, V1, UNF:6:j8ybPdLmWqOvh7eHYFEd2A== [fileUNF]
In Africa, the decline of numerous tree species due to rapid population growth, deforestation, and climate change is a major concern. Several native multi-purpose agroforestry species are at risk of losing genetic diversity, which may lead to their extinction. This is the case fo... |
Millet, Claude Patrick; Delahaie, Boris; Georget, Frederic; Allinne, Clémentine; Solano Sánchez, William; Zhang, Dapeng; Jeune, Wesly; Toniutti, Lucile; Poncet, Valérie, 2024, "SNP Genotyping data for Guadeloupean and Haitian coffee trees", https://doi.org/10.23708/MRPVHL, DataSuds, V1, UNF:6:TVDscn+pMTNyylMj+Q8dqA== [fileUNF]
The West Indies, particularly former French colonies like Haiti and Guadeloupe, were central to the spread of coffee in the Americas. The histories of these Islands are shared until the XIXth century, where they diverged significantly. Still, both Islands experienced a strong dec... |
Barnaud, Adeline; Veltman, Margaretha; Kaczmarek, Thomas; Argout, Xavier; Vigouroux, Yves; Berthouly-Salazar, Cecile; Billot, Claire, 2024, "High throughput genetic diversity analyses of neglected crops: training data, codes and materials (Africa)", https://doi.org/10.23708/ETC16I, DataSuds, V1, UNF:6:ON0wb/ZYjxl4qqjnr8NEPA== [fileUNF]
Marginal land is land that is of little agricultural value because crops produced there would be worth less than any rent paid for access to the area. Helping to develop such zones in Africa is a key goal for the EU-funded EWA-BELT project. The aim is to promote the sustainable i... |
Lorieux, Mathias; Triay, Cécile, 2024, "Called genotypes (chromosome 1) from Illumina whole-genome sequencing of an Indica x Japonica rice F2 population", https://doi.org/10.23708/8FXUNC, DataSuds, V1
Motivation: Genotyping of bi-parental populations can be performed with low-coverage next-generation sequencing (LC-NGS). This allows the creation of highly saturated genetic maps at reasonable cost, precisely localized recombination breakpoints (i.e., the crossovers), and minimi... |
Dec 6, 2023
Diop, Baye Magatte; Barnaud, Adeline; Billot, Claire; Guèye, Mame Codou, 2023, "Supplementary data for: Ethnolinguistic and genetic diversity of fonio (Digitaria exilis - Kippist - Stapf) in Senegal", https://doi.org/10.23708/5WDKS1, DataSuds, V1, UNF:6:NeauNrptcRyq6NeGtIhJqg== [fileUNF]
This data on fonio highlighted that social factors are pivotal in structuring diversity and should be taken into greater consideration in research and conservation projects to dovetail local and regional scales. It also showed that neglected species such as fonio - which are seld... |
Millet, Claude Patrick; Allinne, Clémentine; Vi, Tram; Marraccini, Pierre; Verleysen, Lauren; Couderc, Marie; Ruttink, Tom; Zhang, Dapeng; Solano Sánchez, William; Christine, Tranchant-Dubreuil; Jeune, Wesly; Poncet, Valérie, 2023, "Genotyping data for field samples from Haitian coffee agroforestry systems and international collection accessions", https://doi.org/10.23708/T6YZML, DataSuds, V1, UNF:6:4wzzOYlt0nsxd5jgI0e5Eg== [fileUNF]
Though facing significant challenges, Coffee (Coffea arabica) grown in Haitian agroforestry systems are important contributors to rural livelihoods and provide several ecosystem services. There has been little work done on their genetic diversity and the variety mixtures used, an... |
Kaczmarek, Thomas; Van der Veen, Marijke; Ivorra, Sarah; Mattingly, David; Terral, Jean-Frederic; Gros-Balthazard, Muriel, 2023, "Origins and evolution of oasis agriculture in the Sahara: morphometric measurements of archaeological and modern date palm seeds", https://doi.org/10.23708/D3WASI, DataSuds, V1, UNF:6:Z02ean4vSayKRRTZjiasPw== [fileUNF]
The development of oasis agriculture is a turning point for humans in North Africa and West Asia. The date palm (Phoenix dactylifera L.), is one of the most critical species in these agroecosystems. It was domesticated in the Gulf region over 6,000 years ago and later spread to o... |
Kaczmarek, Thomas; Causse, Sandrine; Abdul, Suleiman Dangana; Abraham, Solomon; Achigan-Dako, Enoch G.; Adje, Charlotte; Adjebeng-Danquah, Joseph; Agyare, Richard Y.; Akanvou, Louise; Bakasso, Yacoubou; Barry, Mamadou B.; Bonsu, Samuel K.; Calatayud, Caroline; Conde, Soukeye; Couderc, Marie; Dachi, Stephen N.; Diallo, T; Diop, Baye M.; Deu, Monique; Gueye, Mame C.; Ibrahim Bio Yerima, Abdou R.; Issah, Abdul R; Kane, Ndjido Ardo; Kombiok, James M.; Ngom, Ablaye; Noyer, Jean-Louis; Olodo, Katina; Oselebe, Happiness O.; Pham, Jean-Louis; Picquet, Marie; Puozaa, Doris K.; Rivallan, Ronan; Saidou, Sani; Sekloka, Emmanuel; Tengey, Theophilus K.; Uyoh, Edak; Vancoppenolle, Sylvie; Vigouroux, Yves; Zekraoui, Leila; Leclerc, Christian; Barnaud, Adeline; Billot, Claire, 2023, "Genetic diversity assessment of 1539 fonio (Digitaria exilis) accessions in West Africa: SSRs data", https://doi.org/10.23708/TX5DE2, DataSuds, V1, UNF:6:3fJ9FCQhz8EPtGubWUVcZA== [fileUNF]
Neglected and under-utilized species represent important genetic resources and untapped reservoirs of diversity to address global food and nutrition challenges. Characterizing the extent of their genetic diversity and making it available is of prime importance to their wider use... |
Silva, Alexander; Montoya, María Elker; Quintero, Constanza; Cuasquer, Juan; Tohme, Joe; Graterol, Eduardo; Cruz, Maribel; Lorieux, Mathias, 2023, "Genotypic and phenotypic data for Rice hoja blanca disease resistance QTL analysis", https://doi.org/10.23708/EERVFW, DataSuds, V1, UNF:6:0DU/A3JpDpAzWfzkjq7pXA== [fileUNF]
These data can be used to search for quantitative trait loci (QTLs) for resistance to the Rice hoja blanca disease: - Genotypic matrices of single nucleotide polymorphism (SNP) data in four independent F2, F3 segregating populations of rice (Oryza sativa L.) derived from resistan... |
Tranchant, Christine; Chenal, Clothilde; Blaison, Mathieu; Albar, Laurence; Klein, Valentin; Mariac, Cédric; Wing, Rod; Vigouroux, Yves; Sabot, Francois, 2022, "Supporting data and code for the African Rice Panreference produced by the frangiPANe software", https://doi.org/10.23708/93OQMD, DataSuds, V3, UNF:6:J8wm0efC8Lf7KQQ/txrx4Q== [fileUNF]
We present here FrangiPANe (https://github.com/tranchant/frangiPANe), a pipeline developed to build panreference using short reads through a map-then-assemble strategy and a dataset corresponding to 515 Mb of new sequences (484,394 non redundant sequences) in addition to the CG14... |
