Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes

Version 3.0
Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
Orjuela, Julie; Comte, Aurore; Ravel, Sébastien; Charriat, Florian; Vi, Tram; Sabot, François; Cunnac, Sébastien, 2022, "Source code of CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes", https://doi.org/10.23708/TBPNWJ, DataSuds, V3
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Description
CulebrONT is an open-source, scalable, modulable and traceable snakemake pipeline, able to launch multiple assembly tools in parallel and providing help for choosing the best possible assembly.
Documentation: https://culebront-pipeline.readthedocs.io/en/2.1.1/
Code development: https://github.com/SouthGreenPlatform/culebrONT

The authors acknowledge the IRD i-Trop HPC (South Green Platform) from IRD Montpellier for providing resources that contributed to this work.
Subject Computer and Information Science
Keyword assembly, quality control, long reads, FAIR, reproducibility, snakemake pipeline, python package, genome
Related Publication Julie Orjuela, Aurore Comte, Sébastien Ravel, Florian Charriat, Tram Vi, François Sabot, Sébastien Cunnac. CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes. https://www.biorxiv.org/content/10.1101/2021.07.19.452922v2 doi: 10.1101/2021.07.19.452922
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culebrONT-2.1.1.tar.gz
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Published Aug 18, 2022
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Source code of culebrONT pipeline stable version 2.1.1
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