GrAnnoT

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61 to 70 of 158 Results

Os132278RS1.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 119.4 MB - MD5: 76897e5f9316fab58b2a0c4256eb6785 Data Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).
Os132424RS1.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 104.9 MB - MD5: 4f4dbb77ea3beaaa5a15cd5f29395ea6 Data Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).
OsIR64RS1.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 103.4 MB - MD5: 75ed00b7b1b6fbf940b4d3018cd52e6f Data Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).
PAV_matrix.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 2.1 MB - MD5: a67aa4c80fb648e2586beff20acc3b3f Data PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.
graphaligner_rice_transfer.gaf Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 466.8 MB - MD5: fc73c04183cf27f2eb5878f6eb4caf55 Data Result of the GraphAligner alignment of Nipponbare features on the graph.
AzucenaRS1_named.db.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 114.1 MB - MD5: 17348ce21f9a1fcf73365431548f69d6 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.
AzucenaRS1_named.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 114.1 MB - MD5: 804c4e143ab2d03d5d64e5e84a14de73 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP).
AzucenaRS1_named_unmapped.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: b98afd5ec89d221a537add6e276b31cf Data File produced by Liftoff during annotation transfer.
AzucenaRS1_named_unmappeddb.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 24.0 KB - MD5: d0ea8095b034432d92d46f9a2eb9402d Data File produced by Liftoff during annotation transfer.
Os117425RS1_named.db.gff Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 115.4 MB - MD5: 447841c462c35690f4ad0dbcfab1d908 Data Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.

Os132278RS1.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 119.4 MB -

Data

Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).

Os132424RS1.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 104.9 MB -

Data

Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).

OsIR64RS1.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 103.4 MB -

Data

Result of GrAnnoT annotation transfer from Nipponbare (IRGSP).

PAV_matrix.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 2.1 MB -

Data

PAV matrix resulting from GrAnnoT annotation transfer from Nipponbare (IRGSP) to all the rice genomes embbeded in the pangenome graph.

graphaligner_rice_transfer.gaf

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 466.8 MB -

Data

Result of the GraphAligner alignment of Nipponbare features on the graph.

AzucenaRS1_named.db.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 114.1 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.

AzucenaRS1_named.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 114.1 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP).

AzucenaRS1_named_unmapped.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

AzucenaRS1_named_unmappeddb.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 24.0 KB -

Data

File produced by Liftoff during annotation transfer.

Os117425RS1_named.db.gff

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 115.4 MB -

Data

Result of Liftoff annotation transfer from Nipponbare (IRGSP), in database mode.

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