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1 to 10 of 15 Results

Savanache front-end Sep 29, 2026 - Savanache Mohamed, Mourdas, 2026, "Savanache front-end", https://doi.org/10.23708/TIOUJO, DataSuds, V1 This dataverse contains the Savanache front-end code
Savanache backend Sep 29, 2026 - Savanache Mohamed, Mourdas, 2026, "Savanache backend", https://doi.org/10.23708/INDK3I, DataSuds, V1 This dataverse contains the source code for Savanache back-end publication
Savanache API Sep 29, 2026 - Savanache Mohamed, Mourdas, 2026, "Savanache API", https://doi.org/10.23708/VBJD0V, DataSuds, V1 This dataverse contains the current code for Savanache API 0.7.0, corresponding with the 1.0.1 main Savanache version
Savanache main Sep 29, 2026 - Savanache Mohamed, Mourdas, 2026, "Savanache main", https://doi.org/10.23708/KWUCXH, DataSuds, V1 This is the main repo code for Savanache, v1.0.1
Simulated data for GranPa v1 paper Aug 26, 2026 - GraNPA Simulated data Carrette, Camille, 2026, "Simulated data for GranPa v1 paper", https://doi.org/10.23708/PGUHS8, DataSuds, V1 This dataset contains all the simulated data (insertion, deletion, original sequences) and graphs for the GranPa v1 paper
rice data Aug 26, 2026 - GraNPA true data Carrette, Camille; Muller, Cédric, 2026, "rice data", https://doi.org/10.23708/M2U8UV, DataSuds, V2, UNF:6:lyR0AOqrO7l0IQSern+OYg== [fileUNF] This dataset cointains all the output from GraNPA original paper for rice
cattle data Jul 31, 2026 - GraNPA true data Carrette, Camille, 2026, "cattle data", https://doi.org/10.23708/2G2DFB, DataSuds, V1 Cattle Pangenome variation graph data used in the GranPA paper
Supplementary command lines for the GraNPA paper Jul 30, 2026 - GraNPA other codes used for the manuscript Carrette, Camille; Muller, Cédric, 2026, "Supplementary command lines for the GraNPA paper", https://doi.org/10.23708/AU5ALD, DataSuds, V1 This file contains all the commands used for generate data and results in the GranPA paper
GranPa source code, v1 Jul 30, 2026 - GranPa Source Code Carrette, Camille; Muller, Cédric, 2026, "GranPa source code, v1", https://doi.org/10.23708/JG96WP, DataSuds, V1 This code is the version used in the GranPa paper
Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

Savanache front-end

Sep 29, 2026 - Savanache

Mohamed, Mourdas, 2026, "Savanache front-end", https://doi.org/10.23708/TIOUJO, DataSuds, V1

This dataverse contains the Savanache front-end code

Savanache backend

Sep 29, 2026 - Savanache

Mohamed, Mourdas, 2026, "Savanache backend", https://doi.org/10.23708/INDK3I, DataSuds, V1

This dataverse contains the source code for Savanache back-end publication

Savanache API

Sep 29, 2026 - Savanache

Mohamed, Mourdas, 2026, "Savanache API", https://doi.org/10.23708/VBJD0V, DataSuds, V1

This dataverse contains the current code for Savanache API 0.7.0, corresponding with the 1.0.1 main Savanache version

Savanache main

Sep 29, 2026 - Savanache

Mohamed, Mourdas, 2026, "Savanache main", https://doi.org/10.23708/KWUCXH, DataSuds, V1

This is the main repo code for Savanache, v1.0.1

Simulated data for GranPa v1 paper

Aug 26, 2026 - GraNPA Simulated data

Carrette, Camille, 2026, "Simulated data for GranPa v1 paper", https://doi.org/10.23708/PGUHS8, DataSuds, V1

This dataset contains all the simulated data (insertion, deletion, original sequences) and graphs for the GranPa v1 paper

rice data

Aug 26, 2026 - GraNPA true data

Carrette, Camille; Muller, Cédric, 2026, "rice data", https://doi.org/10.23708/M2U8UV, DataSuds, V2, UNF:6:lyR0AOqrO7l0IQSern+OYg== [fileUNF]

This dataset cointains all the output from GraNPA original paper for rice

cattle data

Jul 31, 2026 - GraNPA true data

Carrette, Camille, 2026, "cattle data", https://doi.org/10.23708/2G2DFB, DataSuds, V1

Cattle Pangenome variation graph data used in the GranPA paper

Supplementary command lines for the GraNPA paper

Jul 30, 2026 - GraNPA other codes used for the manuscript

Carrette, Camille; Muller, Cédric, 2026, "Supplementary command lines for the GraNPA paper", https://doi.org/10.23708/AU5ALD, DataSuds, V1

This file contains all the commands used for generate data and results in the GranPA paper

GranPa source code, v1

Jul 30, 2026 - GranPa Source Code

Carrette, Camille; Muller, Cédric, 2026, "GranPa source code, v1", https://doi.org/10.23708/JG96WP, DataSuds, V1

This code is the version used in the GranPa paper

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

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