PANEEC Team

Featured Dataverses

In order to use this feature you must have at least one published or linked dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

101 to 110 of 150 Results

readme_outputs.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 4.7 KB - MD5: 96b3b158184af284e59d5cceb5e3dfd3 Documentation Contains a description of all folders in this dataset.
reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 4.3 MB - MD5: 0d8eea6e736f370b2c3fb6237d746232 Data Intermediate file produced by Liftoff during the E.coli annotation transfer.
reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 229.8 MB - MD5: 40ebe8ac4299a91fbcc080e0a35e725e Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
reference_all_to_target_all.sam Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 250.2 MB - MD5: da6adfa01f20e09d1f881ecf62d8ca71 Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
reference_all_to_target_all.sam Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 5.4 MB - MD5: 03cc2784baaa0390c71efb85d1c3e9cc Data Intermediate file produced by Liftoff during the E.coli annotation transfer.
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 9.4 KB - MD5: 0a85d666947893338681208691cc96de Data File produced by Liftoff during the E.coli annotation transfer.
vg_annotation_files.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 409.4 MB - MD5: 6c74d159afe87099e500fcdf2fc6180a Data Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.
add_features_to_graph.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 1.5 KB - MD5: c15f2b3d1f3c6aedd9b04f773f38f9fc Code
alignment.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 7.0 KB - MD5: 6fb1bf4fa6c36681a3cf3b2401437a09 Code

readme_outputs.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 4.7 KB -

Documentation

Contains a description of all folders in this dataset.

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 4.3 MB -

Data

Intermediate file produced by Liftoff during the E.coli annotation transfer.

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 229.8 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

reference_all_to_target_all.sam

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 250.2 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

reference_all_to_target_all.sam

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 5.4 MB -

Data

Intermediate file produced by Liftoff during the E.coli annotation transfer.

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 9.4 KB -

Data

File produced by Liftoff during the E.coli annotation transfer.

vg_annotation_files.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 409.4 MB -

Data

Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.

add_features_to_graph.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 1.5 KB -

Code

alignment.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 7.0 KB -

Code

Add Data

Share Dataverse

Link Dataverse

Reset Modifications