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generate_ref.py
Jul 30, 2026 - GranPa source code, v1
Python Source Code - 1.7 KB - MD5: 960b8d6cff21f335883295b493e5f8f2
granpa_simu.py
Jul 30, 2026 - GranPa source code, v1
Python Source Code - 4.0 KB - MD5: 2961b13fa88633a84a8a89ec77dde633
GranPa Source Code(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026GranPA
GranPA(IRD - Institut de Recherche pour le Développement)
Jul 30, 2026
This dataverse contains the data, codes and command lines used for the GranPA v1 article
get_seglen_frombam.py
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
gratools_core_dispensable_ratio_white.png
gratools_core_dispensable_ratio_white.png
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
PNG Image - 98.8 KB - MD5: c52a96e1a3a1c1fcfe49399c5030fc86
Documentation
Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_depth_nodes_stat_white.png
gratools_depth_nodes_stat_white.png
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
PNG Image - 124.7 KB - MD5: 8a9f04f9ac34ae48143f1ec262218df2
Documentation
Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_rice_analysis_commands.md
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327
Documentation
This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
gratools_stats_white.png
gratools_stats_white.png
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
PNG Image - 370.3 KB - MD5: e8eeed32f3adcea3d7e0cd1e6f805e96
Documentation
Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
print_venn_gratools.R
Mar 10, 2026 - Supporting data and scripts produced by the GraTools software
R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1
Code
Script for advanced GraTools pangenome analysis; full details are provided in the included README.
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