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201 to 210 of 472 Results

granpa_simu.py Jul 30, 2026 - GranPa source code, v1 Python Source Code - 4.0 KB - MD5: 2961b13fa88633a84a8a89ec77dde633
GranPa Source Code(IRD - Institut de Recherche pour le Développement) Jul 30, 2026GranPA
GranPA(IRD - Institut de Recherche pour le Développement) Jul 30, 2026 This dataverse contains the data, codes and command lines used for the GranPA v1 article
Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
get_seglen_frombam.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
gratools_core_dispensable_ratio_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 98.8 KB - MD5: c52a96e1a3a1c1fcfe49399c5030fc86 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_depth_nodes_stat_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 124.7 KB - MD5: 8a9f04f9ac34ae48143f1ec262218df2 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_rice_analysis_commands.md Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327 Documentation This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
gratools_stats_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 370.3 KB - MD5: e8eeed32f3adcea3d7e0cd1e6f805e96 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
print_venn_gratools.R Mar 10, 2026 - Supporting data and scripts produced by the GraTools software R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.

granpa_simu.py

Jul 30, 2026 - GranPa source code, v1

Python Source Code - 4.0 KB -

GranPa Source Code(IRD - Institut de Recherche pour le Développement)

Jul 30, 2026GranPA

GranPA(IRD - Institut de Recherche pour le Développement)

Jul 30, 2026

This dataverse contains the data, codes and command lines used for the GranPA v1 article

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

get_seglen_frombam.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 3.3 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

gratools_core_dispensable_ratio_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 98.8 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_depth_nodes_stat_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 124.7 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_rice_analysis_commands.md

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Markdown Text - 33.9 KB -

Documentation

This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.

gratools_stats_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 370.3 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

print_venn_gratools.R

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

R Syntax - 947 B -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

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