PANEEC Team

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221 to 230 of 266 Results

reference_all_genes.fa Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 229.8 MB - MD5: 40ebe8ac4299a91fbcc080e0a35e725e Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
reference_all_to_target_all.sam Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Unknown - 250.2 MB - MD5: da6adfa01f20e09d1f881ecf62d8ca71 Data Intermediate file produced by Liftoff during the human Chr1 annotation transfer.
unmapped_features.txt Mar 10, 2025 - Output from the analysis described in GrAnnoT paper Plain Text - 57.8 KB - MD5: c601b2cd1df7caed7c8ba9ae52225fbe Data File produced by Liftoff during the human Chr1 annotation transfer
vg_annotation_files.zip Mar 10, 2025 - Output from the analysis described in GrAnnoT paper ZIP Archive - 409.4 MB - MD5: 6c74d159afe87099e500fcdf2fc6180a Data Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.
add_features_to_graph.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 1.5 KB - MD5: c15f2b3d1f3c6aedd9b04f773f38f9fc Code
alignment.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 7.0 KB - MD5: 6fb1bf4fa6c36681a3cf3b2401437a09 Code
applications.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 6.0 KB - MD5: 418d888d2cbdfd93a080822e2736487f Code
argparser.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 8.8 KB - MD5: 8f85f624e7aa84915d29ce7a123f0309 Code
ClassSegFeat.py Feb 26, 2025 - GrAnnoT source code and scripts Python Source Code - 4.4 KB - MD5: 74b63e3e409372b4c84818707879a478 Code
compare_double_transfer.ipynb Feb 26, 2025 - GrAnnoT source code and scripts Jupyter Notebook - 10.8 KB - MD5: b8c3caec230a800edaabfbe7d5500fa6 Code

reference_all_genes.fa

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 229.8 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

reference_all_to_target_all.sam

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Unknown - 250.2 MB -

Data

Intermediate file produced by Liftoff during the human Chr1 annotation transfer.

unmapped_features.txt

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

Plain Text - 57.8 KB -

Data

File produced by Liftoff during the human Chr1 annotation transfer

vg_annotation_files.zip

Mar 10, 2025 - Output from the analysis described in GrAnnoT paper

ZIP Archive - 409.4 MB -

Data

Contains the intermediate and final files from the VG annotation transfers through the pangenome graph.

add_features_to_graph.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 1.5 KB -

Code

alignment.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 7.0 KB -

Code

applications.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 6.0 KB -

Code

argparser.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 8.8 KB -

Code

ClassSegFeat.py

Feb 26, 2025 - GrAnnoT source code and scripts

Python Source Code - 4.4 KB -

Code

compare_double_transfer.ipynb

Feb 26, 2025 - GrAnnoT source code and scripts

Jupyter Notebook - 10.8 KB -

Code

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