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21 to 30 of 153 Results

K_12_MG1655_09949b0.fasta Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.5 MB - MD5: 4e617b3e53fbe61f2ca689dda227a674 Data Fasta file of the genome K_12_MG1655_09949b0, from the paper available at http://dx.doi.org/10.7554/eLife.78834.
nb_allFeatures.fa Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 626.5 MB - MD5: 25854fb0391bc1676dcddc967fdf3371 Data Fasta file of all the features from the annotation file "nb_allFeatures.gff3".
nb_allFeatures.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 77.7 MB - MD5: 4a8e0be436e73bdf85baa362947c6dba Data Annotation file of the genome Nipponbare from the Rice Genome Annotation Project, available at https://rice.uga.edu/.
nb_allFeatures_renamed_filter.bed Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper PLINK Binary - 92.5 MB - MD5: 09bb2ab302dd81c51549bff1a2e4116e Data Bed file with all the features from the annotation file "nb_allFeatures.gff3".
nb_allFeatures_renamepath_annotate.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 92.5 MB - MD5: f9a87d3c48157c180a641b65d0d89412 Data Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.
O127_H6_E2348_69_193637c.fasta Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 4.8 MB - MD5: ad214c5247cba57dc04534a108ef3a92 Data Fasta file of the genome O127_H6_E2348_69_193637c, from the paper available at http://dx.doi.org/10.7554/eLife.78834.
readme_data.txt Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 5.7 KB - MD5: 8394446a4ae71c7c0b3b8709b665f196 Documentation Contains a description of all files in this dataset.
refpath_odgi Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 663 B - MD5: 52f6a241090f7c84ec4bb2647a25c280 Text file necessary to run ODGI on the rice data.
refpath_vg Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Plain Text - 687 B - MD5: f46438fd1982895d067497b239b317c5 Data Text file necessary to run VG on the rice data.
sequence_filter_rename_K_12_MG1655_09949b0.gff3 Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 2.6 MB - MD5: 98cd96703f495ba1a8ae4c35377c3b78 Data Annotation file of the genome K_12_MG1655_09949b0, adapted from https://www.ncbi.nlm.nih.gov/nuccore/U00096.3 to match the pangenome graph.

K_12_MG1655_09949b0.fasta

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.5 MB -

Data

Fasta file of the genome K_12_MG1655_09949b0, from the paper available at http://dx.doi.org/10.7554/eLife.78834.

nb_allFeatures.fa

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 626.5 MB -

Data

Fasta file of all the features from the annotation file "nb_allFeatures.gff3".

nb_allFeatures.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 77.7 MB -

Data

Annotation file of the genome Nipponbare from the Rice Genome Annotation Project, available at https://rice.uga.edu/.

nb_allFeatures_renamed_filter.bed

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

PLINK Binary - 92.5 MB -

Data

Bed file with all the features from the annotation file "nb_allFeatures.gff3".

nb_allFeatures_renamepath_annotate.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 92.5 MB -

Data

Annotation file of the genome Nipponbare adapted from the Rice Genome Annotation Project, available at https://rice.uga.edu/.

O127_H6_E2348_69_193637c.fasta

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 4.8 MB -

Data

Fasta file of the genome O127_H6_E2348_69_193637c, from the paper available at http://dx.doi.org/10.7554/eLife.78834.

readme_data.txt

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 5.7 KB -

Documentation

Contains a description of all files in this dataset.

refpath_odgi

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 663 B -

Text file necessary to run ODGI on the rice data.

refpath_vg

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Plain Text - 687 B -

Data

Text file necessary to run VG on the rice data.

sequence_filter_rename_K_12_MG1655_09949b0.gff3

Mar 10, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 2.6 MB -

Data

Annotation file of the genome K_12_MG1655_09949b0, adapted from https://www.ncbi.nlm.nih.gov/nuccore/U00096.3 to match the pangenome graph.

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