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301 to 310 of 463 Results

usecase2_subgraph_fasta_extraction.rst Mar 6, 2026 - Code source for GraTools v1.1.0 Unknown - 5.7 KB - MD5: ce1d11db1bdf498fe991bce82bd53812
usecase3_core_dispensable_groups.rst Mar 6, 2026 - Code source for GraTools v1.1.0 Unknown - 11.5 KB - MD5: 6776296a620afa02dbf44276ac52c396
usecase4_advanced_pangenome_size.rst Mar 6, 2026 - Code source for GraTools v1.1.0 Unknown - 5.5 KB - MD5: 9d8ebc8e68f4630c7aeb7a415f5377e6
useful_function.py Mar 6, 2026 - Code source for GraTools v1.1.0 Python Source Code - 10.1 KB - MD5: 38b1577819a4541c067129a2880140e7
venn_gratools.py Mar 6, 2026 - Code source for GraTools v1.1.0 Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704
venn_jap_ind_core.png Mar 6, 2026 - Code source for GraTools v1.1.0 PNG Image - 95.7 KB - MD5: 7c43397a420dc9dd4eb5d871723198ec
Data used for the analysis described in GrAnnoT paper Oct 29, 2025 - GrAnnoT data and output Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6 GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.
O157_H7_EC4115_0a2c271.fa Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 5.4 MB - MD5: cbf164a04f045bcb8b669b1897d56ee0 Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.
O157_H7_EC4115_0a2c271_grannot.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.6 MB - MD5: dc9764aaead09be486297f1466bc4ef7 Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.
O157_H7_EC4115_0a2c271_liftoff.gff Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper Unknown - 3.3 MB - MD5: c855c9ae86eeec6061576058aa1273bf Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.

usecase2_subgraph_fasta_extraction.rst

Mar 6, 2026 - Code source for GraTools v1.1.0

Unknown - 5.7 KB -

usecase3_core_dispensable_groups.rst

Mar 6, 2026 - Code source for GraTools v1.1.0

Unknown - 11.5 KB -

usecase4_advanced_pangenome_size.rst

Mar 6, 2026 - Code source for GraTools v1.1.0

Unknown - 5.5 KB -

useful_function.py

Mar 6, 2026 - Code source for GraTools v1.1.0

Python Source Code - 10.1 KB -

venn_gratools.py

Mar 6, 2026 - Code source for GraTools v1.1.0

Python Source Code - 2.8 KB -

venn_jap_ind_core.png

Mar 6, 2026 - Code source for GraTools v1.1.0

PNG Image - 95.7 KB -

Data used for the analysis described in GrAnnoT paper

Oct 29, 2025 - GrAnnoT data and output

Marthe, Nina; Sabot, Francois, 2025, "Data used for the analysis described in GrAnnoT paper", https://doi.org/10.23708/DO1RTF, DataSuds, V6

GrAnnoT is an annotation transfer tool for pangenome graph. It was tested and compared to other approaches, and the data necessary for these tests is available in this dataset. It includes mainly pangenome graphs, genomes, and annotations.

O157_H7_EC4115_0a2c271.fa

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 5.4 MB -

Fasta file of the genome O157_H7_EC4115_0a2c271, NCBI ID: NC_011353.1.

O157_H7_EC4115_0a2c271_grannot.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.6 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the pangenome graph.

O157_H7_EC4115_0a2c271_liftoff.gff

Oct 29, 2025 - Data used for the analysis described in GrAnnoT paper

Unknown - 3.3 MB -

Annotation file of the genome O157_H7_EC4115_0a2c271, adapted from https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000021125.1/ to match the corresponding fasta file.

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