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Publication Year: 2021

181 to 190 of 370 Results

UMR VITROME Sep 8, 2021 Vecteurs – Infections Tropicales et Méditerranéennes VITROME est une UMR crée en janvier 2018 sous les labels d’Aix-Marseille Université (AMU), l’Institut de Recherche pour le Développement (IRD), le Service de Santé des Armées (SSA), et un partenariat avec l’Assistance Publique...
1_TtmappednewTtvar_biallelic.vcf.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 704.4 MB - MD5: 4461877afe51bc505f570808593aa7c0 Data Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.
2_Tursiops_unlinkedSNPs.beagle.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 85.1 MB - MD5: 8fe3f103955bdd7dd145c316dc008fe6 Data Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...
3_Tursiops_ALL.haplo.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 108.0 MB - MD5: e7909efb3649e2ac35f3cb17268be917 Data haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...
4_GhostAncestry-master.tar.gz Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Gzip Archive - 8.8 KB - MD5: d5234dbb967ad08679ed0eb346e3308e Code GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...
Tursiop_samples_ALL.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 351 B - MD5: 8b7e2ce3192a5f460626c00d41c18f65 Data Names of the samples and their order. See materials and methods and supplementary material for details on data generation
Tursiop_samples_no7Tt182.bamlist.txt Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins Unknown - 344 B - MD5: 734cebd2c7212d5a5b48cead8ebd0d42 Data Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation
Pole SAND(IRD, Cirad, INRAE, Montpellier SupAgro, Ciheam-IAMM) Aug 25, 2021UMR MoISA Vers une Sécurité Alimentaire et Nutritionnelle Durable des populations
UMR MoISA(Cirad, INRAE, IRD, Montpellier SupAgro, Ciheam-IAMM) Aug 25, 2021 Montpellier Interdisciplinary research center on Sustainable Agri-food systems L'UMR MoISA s'intéresse aux problématiques liées aux stratégies d'acteurs, qu'ils soient privés ou publics, individuels (consommateurs) ou collectifs (groupes sociaux de production marchande ou non mar...
Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude Jul 21, 2021 - UMR ESPACE-DEV Loireau, Maud; Fargette, Mireille; DAVID, Gilbert, 2021, "Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude", https://doi.org/10.23708/RGHHLQ, DataSuds, V1 Ce jeu de données est constitué de neuf fiches descriptives de paysages et leur cartographie. Il s’appuie sur des campagnes d’observations paysagères de terrain entre 2012 et 2016 sur un cas d’étude du versant Ouest de l'île de La Réunion (partie Sud de la commune de Saint Paul,...

UMR VITROME

Sep 8, 2021

Vecteurs – Infections Tropicales et Méditerranéennes VITROME est une UMR crée en janvier 2018 sous les labels d’Aix-Marseille Université (AMU), l’Institut de Recherche pour le Développement (IRD), le Service de Santé des Armées (SSA), et un partenariat avec l’Assistance Publique...

1_TtmappednewTtvar_biallelic.vcf.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 704.4 MB -

Data

Variant calling format (VCF) file including the biallelic single nucleotide variants (SNVs or SNPs) used in Louis et al. The sample names are in the vcf file header. See the materials and methods and supplementary material of the manuscript for details on data generation.

2_Tursiops_unlinkedSNPs.beagle.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 85.1 MB -

Data

Genotype likelihood LD pruned input file in Beagle format. Note that Sample order (Ind0 to Ind55) is given in the file Tursiops_samples_no7Tt182.bamlist. Sample 7Tt182 is not included in the beagle file due to its low coverage but clusters with the other NWAp. See materials and...

3_Tursiops_ALL.haplo.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 108.0 MB -

Data

haplo file (pseudo-haploid random call): samples order is given in Tursiops_samples_ALL.bamlist. Note that 7Tt182 is included, but was not included in the analyses, which are based on subset of individuals (one coastal individual and all allopatric pelagic individuals except from...

4_GhostAncestry-master.tar.gz

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Gzip Archive - 8.8 KB -

Code

GhostAncestry-master contains the codes written by Benoit Simon-Bouhet to generate the input files for the ghost ancestry analyses - also available at https://github.com/besibo/GhostAncestry ## The folder 1_One Scaffold contains the code to test the script on one scaffold only #...

Tursiop_samples_ALL.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 351 B -

Data

Names of the samples and their order. See materials and methods and supplementary material for details on data generation

Tursiop_samples_no7Tt182.bamlist.txt

Sep 2, 2021 - Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins

Unknown - 344 B -

Data

Names of the samples and their order, after excluding sample 7Tt182. See materials and methods and supplementary material for details on data generation

Pole SAND(IRD, Cirad, INRAE, Montpellier SupAgro, Ciheam-IAMM)

Aug 25, 2021UMR MoISA

Vers une Sécurité Alimentaire et Nutritionnelle Durable des populations

UMR MoISA(Cirad, INRAE, IRD, Montpellier SupAgro, Ciheam-IAMM)

Aug 25, 2021

Montpellier Interdisciplinary research center on Sustainable Agri-food systems L'UMR MoISA s'intéresse aux problématiques liées aux stratégies d'acteurs, qu'ils soient privés ou publics, individuels (consommateurs) ou collectifs (groupes sociaux de production marchande ou non mar...

Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude

Jul 21, 2021 - UMR ESPACE-DEV

Loireau, Maud; Fargette, Mireille; DAVID, Gilbert, 2021, "Paysages vivants du versant Ouest de l'île de La Réunion, entre littoral urbanisé et forêt d'altitude", https://doi.org/10.23708/RGHHLQ, DataSuds, V1

Ce jeu de données est constitué de neuf fiches descriptives de paysages et leur cartographie. Il s’appuie sur des campagnes d’observations paysagères de terrain entre 2012 et 2016 sur un cas d’étude du versant Ouest de l'île de La Réunion (partie Sud de la commune de Saint Paul,...

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