DataSuds

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Publication Year: 2026

1 to 10 of 291 Results

Supporting data and scripts produced by the GraTools software Mar 10, 2026 - gratools Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1 Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...
gratools_rice_analysis_commands.md Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Markdown Text - 33.9 KB - MD5: 832f5ec934a8604f260043f64937a327 Documentation This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.
supporting_data_README.txt Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Plain Text - 375 B - MD5: 0102ef91632371fc7f58d2a6ff2bcbd9 Documentation describes the contents of the repository
get_seglen_frombam.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 3.3 KB - MD5: a6ba11cdc66e970252bbe35eba20efe0 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
print_venn_gratools.R Mar 10, 2026 - Supporting data and scripts produced by the GraTools software R Syntax - 947 B - MD5: fbb59535691dd0dc47ec8f190674e4e1 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
README Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Plain Text - 2.1 KB - MD5: 24b9cee6403fbab6f7d945cdee151346 Documentation contains information describing each script available in this repository
script_jap_ind.sh Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Shell Script - 1.0 KB - MD5: a52ca15e3c8d29b76e4828439be17001 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
venn_gratools.py Mar 10, 2026 - Supporting data and scripts produced by the GraTools software Python Source Code - 2.8 KB - MD5: c94ce2c9d8b8d36108bb1f1f41e19704 Code Script for advanced GraTools pangenome analysis; full details are provided in the included README.
gratools_core_dispensable_ratio_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 98.8 KB - MD5: c52a96e1a3a1c1fcfe49399c5030fc86 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.
gratools_depth_nodes_stat_white.png Mar 10, 2026 - Supporting data and scripts produced by the GraTools software PNG Image - 124.7 KB - MD5: 8a9f04f9ac34ae48143f1ec262218df2 Documentation Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

Supporting data and scripts produced by the GraTools software

Mar 10, 2026 - gratools

Ravel, Sebastien; Marthe, Nina; Carrette, Camille; Mohamed, Mourdas; Sabot, Francois; Christine, Tranchant-Dubreuil, 2026, "Supporting data and scripts produced by the GraTools software", https://doi.org/10.23708/M24LJG, DataSuds, V1

Here, we introduce GraTools (https://forge.ird.fr/diade/gratools), a fast and user-friendly command-line tool for manipulating PVGs using the original GFA file. After a one-time graph import, GraTools enables rapid subgraph extraction, fasta sequence retrieval, and comprehensive...

gratools_rice_analysis_commands.md

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Markdown Text - 33.9 KB -

Documentation

This file provides a complete workflow for analyzing pangenome graphs using GraTools, including example commands, explanations, and use cases from the associated study.

supporting_data_README.txt

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Plain Text - 375 B -

Documentation

describes the contents of the repository

get_seglen_frombam.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 3.3 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

print_venn_gratools.R

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

R Syntax - 947 B -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

README

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Plain Text - 2.1 KB -

Documentation

contains information describing each script available in this repository

script_jap_ind.sh

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Shell Script - 1.0 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

venn_gratools.py

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

Python Source Code - 2.8 KB -

Code

Script for advanced GraTools pangenome analysis; full details are provided in the included README.

gratools_core_dispensable_ratio_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 98.8 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

gratools_depth_nodes_stat_white.png

Mar 10, 2026 - Supporting data and scripts produced by the GraTools software

PNG Image - 124.7 KB -

Documentation

Screenshots showing tabulated outputs of several GraTools commands, displaying structured tables with color-coded formatting for improved readability.

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