Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
Featured Dataverses

In order to use this feature you must have at least one published dataverse.

Publish Dataverse

Are you sure you want to publish your dataverse? Once you do so it must remain published.

Publish Dataverse

This dataverse cannot be published because the dataverse it is in has not been published.

Delete Dataverse

Are you sure you want to delete your dataverse? You cannot undelete this dataverse.

Advanced Search

1 to 10 of 167 Results
Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum
Nov 15, 2024 - Porpoises genetics and genomics
Ben Chehida, Yacine; Thumloup, Julie; Schumacher, Cassie; Harkins, Timothy; Aguilar, Alex; Borrell, Asunción; Ferreira, Marisa; Rojas-Bracho, Lorenzo; Robertson, Kelly M.; Taylor, Barbara L.; Víkingsson, Gísli A.; Weyna, Arthur; Romiguier, Jonathan; Morin, Philip A.; Fontaine, M. C., 2020, "Data and scripts for: Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum", https://doi.org/10.23708/QBIUMI, DataSuds, V2
These data and scripts are accompanying the manuscript "Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum" by Ben Chehida Y., Thumloup J., Schumacher C., Harkins T., Aguilar A., Borrell A., Ferreira M., Rojas-Br...
Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins
Nov 15, 2024 - Porpoises genetics and genomics
Louis, M.; Galimberti, M.; Archer, F.; Berrow, S.; Brownlow, A.; Fallon, R.; Nykänen, M.; O’brien, J.; Roberston, K. M.; Rosel, P. E.; Simon-Bouhet, B.; Wegmann, D.; Fontaine, M. C.; Foote, A. D.; Gaggiotti, O. E., 2021, "Replication Data for: Selection on ancestral genetic variation fuels repeated ecotype formation in bottlenose dolphins", https://doi.org/10.23708/Q2MYHE, DataSuds, V2
Data from Louis M., Galimberti M, Archer F., Berrow S., Brownlow A., Fallon R., O'Brien J., Robertson K., Rosel P. E., Simon-Bouhet B., Wegmann D., Fontaine M. C. *, Foote A. D.*, Gaggiotti O. E.*. 2021. Selection on ancestral genetic variation fuels repeated ecotype formation in...
Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Aug 5, 2024
Amaya Romero, Jorge E.; Chenal, Clothilde; Ben Chehida, Yacine; Miles, Alistair; Clarkson, Chris; Pedergnana, Vincent; Wertheim, Bregje; Fontaine, Michael C., 2024, "Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides", https://doi.org/10.23708/WIAJDN, DataSuds, V1
Supporting data and scripts related to the study: Romero, J. E. A., Chenal, C., Chehida, Y. B., Miles, A., Clarkson, C. S., Pedergnana, V., Wertheim, B., & Fontaine, M. C. (2024). Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito...
0_ReadMe.txt
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Plain Text - 3.3 KB - MD5: cbf0f3a53523ca1f2f0ebd1027295d65
ReadMe file - data citation, description and terms of use.
Romero_et_al_GBE2024_AMOVA.tar.gz
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Gzip Archive - 912.2 KB - MD5: 2cc81cffaff0960a37cd965b2f5bfc5d
CodeDataDocumentation
Input files, R-scripts, and raw results required to reproduce the Analysis of Molecular Variance (AMOVA) on the Ag1000G data. The tar archive includes: (1) the multi-fasta DNA sequence input files (.fasta) with the sequence name including the sample-ID + pop_id + [ groups ID ] ;...
Romero_et_al_GBE2024_final_alignment_new_header_no_loop_no_insertions_only_coding_1222seq.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 17.3 MB - MD5: 4874423647b8174bbbf249bf04a5968b
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for all the samples considered (n=1222). These include the 1142 samples from the Anopheles gambiae 1000 genome project (2020), those of the Anopheles gambiae complex from Fontaine et al. 201...
Romero_et_al_GBE2024_final_alignment_new_header_no_loop_no_insertions_only_coding_withoutoutgroup_sorted_1142seq_Ag1000G.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 16.2 MB - MD5: 4ece8cead64adf08c08b3ca4f75964af
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for the 1142 samples from the Anopheles gambiae 1000 genome project (2020). Sample ID are as detailed in Table S2 of the paper. Note that the control region is excluded from the alignment (s...
Romero_et_al_GBE2024_Romero_pipeline_AGC_Fontaine_etal_2015_final_alignment_new_header_no_loop_no_insertions_only_coding_80seq.fasta
Aug 5, 2024 - Replication data and scripts for - Mitochondrial variation in Anopheles gambiae and Anopheles coluzzii: phylogeographic legacy and mito-nuclear associations with metabolic resistance to pathogens and insecticides
Unknown - 1.1 MB - MD5: 44d5c75f8c8fdad58a6f4be465c1c576
Data
Mitogenome DNA sequence alignments (in multi-fasta format) generated in the present study for the samples of the Anopheles gambiae complex from Fontaine et al. 2015, and the two outgroup species (Anopheles chrsityi and Anopheles epiroticus). Sample ID are as detailed in Table S1...
Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Jun 24, 2024
Kambou, Sassan Simplice; Valente, Adeline; Agnew, Philip; Hien, Domonbabele Francois De Sales; Yerbanga, Rakiszendé Serge; Moiroux, Nicolas; Dabire, Kounbor Roch; Pennetier, Cedric; Cohuet, Anna; Carrasco, David, 2024, "Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes", https://doi.org/10.23708/IMJ1WG, DataSuds, V1
Pyrethroids are the most widely used insecticides to control vector borne diseases including malaria. Physiological resistance mechanisms to these insecticides have been well described, whereas those for behavioral resistance remain overlooked. Field data suggest the presence of...
0_ReadMe.txt
Jun 24, 2024 - Replication data and R code for: Non-contact detection of pyrethroids widely used in vector control by Anopheles mosquitoes
Plain Text - 2.8 KB - MD5: f82cd8442b59b02eda7d054223ca1de5
Documentation
ReadMe file - data citation, description and terms of use.
Add Data

Log in to create a dataverse or add a dataset.

Log In
Share Dataverse

Share this dataverse on your favorite social media networks.

Link Dataverse
Reset Modifications

Are you sure you want to reset the selected metadata fields? If you do this, any customizations (hidden, required, optional) you have done will no longer appear.