Infectious Diseases and Vectors: Ecology, Genetics, Evolution and Control

The aims of the group MIVEGEC are to develop integrative and transdisciplinary research to the mechanisms that maintain, amplify and transmit pathogenic agents, along with their genetic and epigenetic determinants, in order to better understand how these systems evolve and to improve their control.
L’UMR MIVEGEC "Maladies Infectieuses et Vecteurs : Ecologie, Génétique, Evolution et Contrôle" a pour mission de comprendre, via des recherches intégratives et transdisciplinaires, les mécanismes de maintenance, d’amplification et de transmission d’agents pathogènes, leurs déterminants génétiques et non génétiques, afin de pouvoir mieux appréhender l’évolution de ces systèmes infectieux et contribuer à en améliorer le contrôle.
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1 to 10 of 246 Results
probe_panel.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 2.0 MB - MD5: 79cd3dfa2761d332bb245d80c80d797c
Données
Virals sequences used for probes design
ReadMe.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 2.9 KB - MD5: 1da614b01e6d144d9b8e429371ed6c4f
Documentation
contains information for understanding the dataset, including a list of each file deposited and its role, in relation to the structure of the files within this repository.
ReadMe_10-23708_LTXIKA.txt
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Plain Text - 1.6 KB - MD5: ea8e34379c7dd2e422ee8c7cc3da5a9b
Documentation
contains the citation, description and conditions of use, or even access, depending on the case, to the dataset
CAMISIM_script.sh
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Shell Script - 4.3 KB - MD5: 7d1270ccb9f41129020b74093984e1ba
Code
Script to generate simulated paired-end metagenomic samples
HelicobacterHepaticus.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 1.7 MB - MD5: 14390a0d82d57ab655b008847fa20887
Données
Companion file for CAMISIM_script.sh
Hepatitis.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 7.4 KB - MD5: 42d1c0892001e9d79a150f4f8d32c248
Données
Companion file for CAMISIM_script.sh
Ippy01.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 3.4 KB - MD5: 1337ad230451f3aaaddec3e44d3f6737
Données
Companion file for CAMISIM_script.sh
Ippy02.fasta
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Unknown - 7.3 KB - MD5: e2cd8bd7437abe2993f2c5b41c4d5d0b
Données
Companion file for CAMISIM_script.sh
virus_genome_to_id.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 202 B - 2 Variables, 3 Observations - UNF:6:u5bQZ+jVWrdnqQ55z0s0Ug==
Données
Companion file for CAMISIM_script.sh (tsv version)
virus_metadata.tab
Mar 4, 2026 - Replication Data and Scripts : ViroSeek a viral detection pipeline for second-generation sequencing
Tabular Data - 242 B - 4 Variables, 4 Observations - UNF:6:zhJIrFmnz3PZU69+GdDv1w==
Données
Companion file for CAMISIM_script.sh (tsv version)
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